Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QFX56_RS07535 Genome accession   NZ_CP123738
Coordinates   1580898..1581584 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 2.6     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575898..1586584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX56_RS07515 rpsT 1576812..1577063 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QFX56_RS07520 holA 1577108..1578082 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  QFX56_RS07525 comEC 1578139..1580340 (-) 2202 WP_001566670.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFX56_RS07530 - 1580345..1580806 (-) 462 WP_000439693.1 ComE operon protein 2 -
  QFX56_RS07535 comEA 1580898..1581584 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  QFX56_RS07540 - 1581624..1582340 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QFX56_RS07545 rsfS 1582343..1582696 (-) 354 WP_001088022.1 ribosome silencing factor -
  QFX56_RS07550 yqeK 1582697..1583281 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QFX56_RS07555 nadD 1583271..1583840 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QFX56_RS07560 yhbY 1583843..1584133 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  QFX56_RS07565 aroE 1584137..1584943 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  QFX56_RS07570 yqeH 1584957..1586057 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=821981 QFX56_RS07535 WP_001793467.1 1580898..1581584(-) (comEA) [Staphylococcus aureus strain 2.6]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=821981 QFX56_RS07535 WP_001793467.1 1580898..1581584(-) (comEA) [Staphylococcus aureus strain 2.6]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974