Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QFX56_RS07285 Genome accession   NZ_CP123738
Coordinates   1533527..1534024 (-) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528527..1539024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX56_RS07260 gcvPB 1528689..1530161 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  QFX56_RS07265 gcvPA 1530154..1531500 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX56_RS07270 gcvT 1531520..1532611 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX56_RS07275 - 1532770..1533294 (-) 525 WP_001015119.1 shikimate kinase -
  QFX56_RS07280 - 1533284..1533430 (-) 147 WP_001789879.1 hypothetical protein -
  QFX56_RS07285 comGF 1533527..1534024 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX56_RS07290 comGE 1533942..1534241 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX56_RS07295 comGD 1534228..1534674 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX56_RS07300 comGC 1534652..1534963 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX56_RS07305 comGB 1534977..1536047 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX56_RS07310 comGA 1536019..1536993 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX56_RS07315 - 1537045..1537668 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX56_RS07320 - 1537665..1537994 (-) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX56_RS07325 - 1537994..1538980 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=821973 QFX56_RS07285 WP_029642894.1 1533527..1534024(-) (comGF) [Staphylococcus aureus strain 2.6]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=821973 QFX56_RS07285 WP_029642894.1 1533527..1534024(-) (comGF) [Staphylococcus aureus strain 2.6]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976