Detailed information NTG0821916

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QCL51_RS03030
• Genome accession: NZ_CP123734
• Coordinates: 646870..647736 (-)
• Length: 288 a.a.
• NCBI ID: WP_338444587.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LTR0
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 641870..652736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCL51_RS02995 (QCL51_02990)	-	642260..643555 (-)	1296	WP_060546218.1	NAD(P)/FAD-dependent oxidoreductase	-
QCL51_RS03000 (QCL51_02995)	-	643640..643813 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
QCL51_RS03005 (QCL51_03000)	-	643946..644575 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
QCL51_RS03010 (QCL51_03005)	-	644631..645062 (-)	432	WP_103443441.1	hypothetical protein	-
QCL51_RS03015 (QCL51_03010)	-	645150..645857 (+)	708	WP_103470188.1	energy-coupling factor ABC transporter permease	-
QCL51_RS03020 (QCL51_03015)	yacG	646050..646250 (-)	201	WP_010951889.1	DNA gyrase inhibitor YacG	-
QCL51_RS03025 (QCL51_03020)	coaE	646247..646870 (-)	624	WP_323601676.1	dephospho-CoA kinase	-
QCL51_RS03030 (QCL51_03025)	pilD	646870..647736 (-)	867	WP_338444587.1	A24 family peptidase	Machinery gene
QCL51_RS03035 (QCL51_03030)	-	647739..648947 (-)	1209	WP_338444588.1	type II secretion system F family protein	-
QCL51_RS03040 (QCL51_03035)	-	649164..649574 (+)	411	WP_012051131.1	pilin	-
QCL51_RS03050 (QCL51_03045)	-	649883..651205 (+)	1323	WP_338444589.1	integrase arm-type DNA-binding domain-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31830.89 Da
• Isoelectric Point: 7.9101

>NTDB_id=821916 QCL51_RS03030 WP_338444587.1 646870..647736(-) (pilD) [Pseudomonas sp. LTR0]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHPRFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVALADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYTSYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=821916 QCL51_RS03030 WP_338444587.1 646870..647736(-) (pilD) [Pseudomonas sp. LTR0]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACCCGCGTTTCGACCTGTGCCTGCCGGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGTTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGTATCCATGTGGCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGGTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTTGTTGGCCTGTGCCTGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCTATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACACCTCATACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.986	96.181	0.5
pilD	Acinetobacter baumannii D1279779	49.11	97.569	0.479
pilD	Acinetobacter nosocomialis M2	48.399	97.569	0.472
pilD	Vibrio campbellii strain DS40M4	48.913	95.833	0.469
pilD	Neisseria gonorrhoeae MS11	47.955	93.403	0.448