Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX10_RS03660 Genome accession   NZ_CP123639
Coordinates   742465..743016 (-) Length   183 a.a.
NCBI ID   WP_280606860.1    Uniprot ID   -
Organism   Ligilactobacillus faecis strain WILCCON 0062     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 737465..748016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX10_RS03635 (QFX10_03635) pnuC 738647..739405 (-) 759 WP_280606856.1 nicotinamide riboside transporter PnuC -
  QFX10_RS03640 (QFX10_03640) - 739667..740650 (+) 984 WP_280606857.1 DUF1002 domain-containing protein -
  QFX10_RS03645 (QFX10_03645) - 740907..741104 (-) 198 WP_280606858.1 hypothetical protein -
  QFX10_RS03650 (QFX10_03650) - 741225..741761 (+) 537 WP_280606859.1 hypothetical protein -
  QFX10_RS03655 (QFX10_03655) rpsR 742206..742442 (-) 237 WP_003695889.1 30S ribosomal protein S18 -
  QFX10_RS03660 (QFX10_03660) ssb 742465..743016 (-) 552 WP_280606860.1 single-stranded DNA-binding protein Machinery gene
  QFX10_RS03665 (QFX10_03665) rpsF 743054..743344 (-) 291 WP_280606861.1 30S ribosomal protein S6 -
  QFX10_RS03670 (QFX10_03670) gyrA 743584..746037 (-) 2454 WP_280606862.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20057.78 Da        Isoelectric Point: 4.6289

>NTDB_id=821853 QFX10_RS03660 WP_280606860.1 742465..743016(-) (ssb) [Ligilactobacillus faecis strain WILCCON 0062]
MINSVVLVGRLTRDPELRYTPSGAAVANFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIQGRIQTR
SYENQQGQRVYVTEVLAEDFSLLESKAESERYRAQHGTSNANVQGSAPSTDNNMPSSNPFGTPANDQGNDAFNSGFANNN
NASADPFANSGQQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=821853 QFX10_RS03660 WP_280606860.1 742465..743016(-) (ssb) [Ligilactobacillus faecis strain WILCCON 0062]
TTGATCAATTCAGTCGTCTTGGTCGGTCGCTTGACCCGTGATCCTGAATTACGGTATACACCGTCAGGAGCAGCTGTCGC
TAACTTTACAGTTGCGATCGATCGTCGCTTTACCAACCAACAAGGTCAACGCGAAGCTGATTTTATCAACTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTTACCCACAAAGGTTCATTGGTCGGGATCCAAGGTCGGATCCAGACGCGT
TCTTATGAGAACCAACAAGGTCAAAGAGTCTATGTTACTGAAGTGCTGGCCGAAGATTTCTCATTGTTAGAATCAAAAGC
CGAATCTGAACGTTACCGCGCACAACATGGTACAAGCAACGCTAATGTGCAAGGTTCAGCTCCTTCAACTGATAATAATA
TGCCATCATCTAATCCATTTGGGACACCAGCTAATGATCAAGGAAACGATGCTTTTAATAGCGGTTTTGCTAATAATAAC
AACGCTTCGGCTGATCCATTTGCTAATAGTGGCCAACAGATCGATATTTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.239

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.284

100

0.563