Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OU418_RS18890 Genome accession   NZ_CP123621
Coordinates   3613174..3613863 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain RLI2019     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3608174..3618863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS18855 (OU418_18865) flgN 3608354..3608836 (-) 483 WP_014481048.1 flagellar protein FlgN -
  OU418_RS18860 (OU418_18870) flgM 3608852..3609118 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  OU418_RS18865 (OU418_18875) yvyF 3609199..3609618 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OU418_RS18870 (OU418_18880) comFC 3609692..3610414 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  OU418_RS18875 (OU418_18885) comFB 3610378..3610674 (-) 297 WP_003227989.1 late competence protein ComFB -
  OU418_RS18880 (OU418_18890) comFA 3610734..3612125 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  OU418_RS18885 (OU418_18895) fakBA 3612231..3613076 (-) 846 WP_003227986.1 DegV family protein -
  OU418_RS18890 (OU418_18900) degU 3613174..3613863 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OU418_RS18895 (OU418_18905) degS 3613946..3615103 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OU418_RS18900 (OU418_18910) yvyE 3615320..3615973 (+) 654 WP_003227979.1 YigZ family protein -
  OU418_RS18905 (OU418_18915) tagV 3615973..3617157 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  OU418_RS18910 (OU418_18920) tagO 3617230..3618306 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=821791 OU418_RS18890 WP_003219701.1 3613174..3613863(-) (degU) [Bacillus subtilis strain RLI2019]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=821791 OU418_RS18890 WP_003219701.1 3613174..3613863(-) (degU) [Bacillus subtilis strain RLI2019]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1