Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   R5031_RS21295 Genome accession   NZ_CP137512
Coordinates   4551547..4552071 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain HPA0271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4546547..4557071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5031_RS21275 (R5031_21275) - 4546614..4549085 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  R5031_RS21280 (R5031_21280) pilM 4549270..4550334 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R5031_RS21285 (R5031_21285) pilN 4550334..4550930 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R5031_RS21290 (R5031_21290) pilO 4550927..4551550 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  R5031_RS21295 (R5031_21295) comL/pilP 4551547..4552071 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R5031_RS21300 (R5031_21300) pilQ 4552125..4554269 (+) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  R5031_RS21305 (R5031_21305) aroK 4554281..4554799 (+) 519 WP_003095833.1 shikimate kinase AroK -
  R5031_RS21310 (R5031_21310) aroB 4554849..4555955 (+) 1107 WP_003114574.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=821792 R5031_RS21295 WP_003095836.1 4551547..4552071(+) (comL/pilP) [Pseudomonas aeruginosa strain HPA0271]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=821792 R5031_RS21295 WP_003095836.1 4551547..4552071(+) (comL/pilP) [Pseudomonas aeruginosa strain HPA0271]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362