Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QFC96_RS05005 Genome accession   NZ_CP123581
Coordinates   951227..952093 (+) Length   288 a.a.
NCBI ID   WP_136903986.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain ZHA1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 946227..957093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS04975 (QFC96_04975) - 946979..947884 (+) 906 WP_283534393.1 SGNH/GDSL hydrolase family protein -
  QFC96_RS04980 (QFC96_04980) - 947899..948531 (+) 633 WP_004270315.1 YpmS family protein -
  QFC96_RS04985 (QFC96_04985) - 948541..948765 (+) 225 WP_004270292.1 YozE family protein -
  QFC96_RS04990 (QFC96_04990) lepB 948765..949319 (+) 555 WP_136903987.1 signal peptidase I -
  QFC96_RS04995 (QFC96_04995) ylqF 949564..950415 (+) 852 WP_162145192.1 ribosome biogenesis GTPase YlqF -
  QFC96_RS05000 (QFC96_05000) - 950415..951176 (+) 762 WP_039099416.1 ribonuclease HII -
  QFC96_RS05005 (QFC96_05005) dprA 951227..952093 (+) 867 WP_136903986.1 DNA-processing protein DprA Machinery gene
  QFC96_RS05010 (QFC96_05010) - 952188..953042 (+) 855 WP_076786921.1 SDR family oxidoreductase -
  QFC96_RS05015 (QFC96_05015) - 953075..953506 (+) 432 WP_283534394.1 Rrf2 family transcriptional regulator -
  QFC96_RS05020 (QFC96_05020) topA 953754..955838 (+) 2085 WP_283534395.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31651.61 Da        Isoelectric Point: 7.4639

>NTDB_id=821379 QFC96_RS05005 WP_136903986.1 951227..952093(+) (dprA) [Latilactobacillus curvatus strain ZHA1]
MLTKKQLLLKVHLADGFGPISELRLAAWLVTSHNWALSALEIAQIACLPERYWLTFQTSFDSLALQQKCATHERYVQYLT
ILEADYPQRLLETHCPPTVLFYCGDLSVLKQPCVAVVGARQATEYTKQALQHLLGLPQTTTIISGLAQGADAMAHEVALQ
KGLRPIGVIGTGLNCYYPPQNEHLQQAVAEKGLLISEYGLDVTAKKHHFPARNRIIAGLCHSLVVTEARQKSGSLITANL
ALQANRNVYALPGQVNHSLSAGCNQLILAGATPLLNQQLLLDELHYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=821379 QFC96_RS05005 WP_136903986.1 951227..952093(+) (dprA) [Latilactobacillus curvatus strain ZHA1]
GTGTTGACTAAAAAGCAATTATTATTGAAAGTACACCTGGCAGATGGGTTTGGCCCCATCAGTGAATTACGCTTAGCCGC
ATGGTTAGTAACGAGTCACAATTGGGCTTTATCGGCATTGGAGATTGCGCAGATTGCGTGTTTACCGGAGCGATATTGGC
TGACCTTTCAGACTAGTTTTGACAGTCTAGCTCTGCAACAGAAGTGTGCCACGCATGAACGTTATGTTCAGTATCTGACG
ATTCTAGAAGCAGATTATCCGCAACGGTTGTTAGAAACCCATTGTCCGCCAACAGTTTTATTTTATTGCGGCGATTTAAG
TGTTTTGAAACAGCCATGTGTTGCGGTGGTTGGTGCGCGGCAAGCCACGGAGTATACTAAGCAAGCCCTGCAGCATTTAT
TGGGATTACCACAAACAACGACGATTATCAGTGGTTTAGCTCAAGGGGCGGATGCGATGGCGCATGAAGTTGCACTCCAA
AAAGGGTTACGACCGATTGGCGTGATTGGAACGGGCTTGAATTGTTATTACCCACCACAAAACGAACACTTGCAACAGGC
GGTCGCTGAAAAAGGGTTATTGATATCAGAATACGGTTTGGACGTAACGGCTAAGAAGCACCACTTCCCAGCCCGAAATC
GGATTATTGCCGGACTTTGTCATAGTTTAGTGGTCACAGAAGCCCGCCAAAAAAGTGGTAGCTTAATCACCGCTAATTTA
GCATTACAAGCCAATCGTAACGTATATGCCTTACCGGGCCAGGTTAATCATTCATTATCGGCAGGCTGTAATCAACTGAT
TTTAGCCGGTGCAACGCCGCTTTTAAATCAACAATTGTTATTGGACGAGTTGCATTATTTTGATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

76.042

100

0.76
  dprA Legionella pneumophila strain ERS1305867

36.177

100

0.368