Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QFC96_RS03600 | Genome accession | NZ_CP123581 |
| Coordinates | 679322..679786 (+) | Length | 154 a.a. |
| NCBI ID | WP_283534037.1 | Uniprot ID | - |
| Organism | Latilactobacillus curvatus strain ZHA1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 666632..704119 | 679322..679786 | within | 0 |
Gene organization within MGE regions
Location: 666632..704119
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFC96_RS03470 (QFC96_03470) | - | 666632..667777 (-) | 1146 | WP_283534325.1 | site-specific integrase | - |
| QFC96_RS03475 (QFC96_03475) | - | 668035..669642 (-) | 1608 | WP_283534326.1 | SIR2 family protein | - |
| QFC96_RS03480 (QFC96_03480) | - | 669785..670246 (-) | 462 | WP_283534327.1 | DUF4429 domain-containing protein | - |
| QFC96_RS03485 (QFC96_03485) | - | 670325..670738 (-) | 414 | WP_283534328.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QFC96_RS03490 (QFC96_03490) | - | 670752..671114 (-) | 363 | WP_283534329.1 | helix-turn-helix transcriptional regulator | - |
| QFC96_RS03495 (QFC96_03495) | - | 671389..671580 (+) | 192 | WP_283534330.1 | helix-turn-helix transcriptional regulator | - |
| QFC96_RS03500 (QFC96_03500) | - | 671621..672319 (+) | 699 | WP_283534331.1 | Rha family transcriptional regulator | - |
| QFC96_RS03505 (QFC96_03505) | - | 672336..672527 (+) | 192 | WP_283534332.1 | hypothetical protein | - |
| QFC96_RS03510 (QFC96_03510) | - | 672541..672858 (+) | 318 | WP_283534333.1 | DUF771 domain-containing protein | - |
| QFC96_RS03515 (QFC96_03515) | - | 672848..673051 (+) | 204 | WP_283534334.1 | hypothetical protein | - |
| QFC96_RS03520 (QFC96_03520) | - | 673048..673218 (+) | 171 | WP_283534052.1 | hypothetical protein | - |
| QFC96_RS03525 (QFC96_03525) | - | 673219..673422 (+) | 204 | WP_283534051.1 | hypothetical protein | - |
| QFC96_RS03530 (QFC96_03530) | - | 673419..674279 (+) | 861 | WP_283534335.1 | lambda-exonuclease family protein | - |
| QFC96_RS03535 (QFC96_03535) | - | 674283..675074 (+) | 792 | WP_283534336.1 | recombinase RecT | - |
| QFC96_RS03540 (QFC96_03540) | - | 675087..675989 (+) | 903 | WP_283534337.1 | DnaD domain protein | - |
| QFC96_RS03545 (QFC96_03545) | - | 675992..676195 (+) | 204 | WP_283534338.1 | hypothetical protein | - |
| QFC96_RS03550 (QFC96_03550) | - | 676195..676623 (+) | 429 | WP_283534339.1 | hypothetical protein | - |
| QFC96_RS03555 (QFC96_03555) | - | 676616..676789 (+) | 174 | WP_283534045.1 | hypothetical protein | - |
| QFC96_RS03560 (QFC96_03560) | - | 677089..677307 (+) | 219 | WP_283534044.1 | hypothetical protein | - |
| QFC96_RS03565 (QFC96_03565) | - | 677313..677558 (+) | 246 | WP_283534043.1 | hypothetical protein | - |
| QFC96_RS03570 (QFC96_03570) | - | 677558..677686 (+) | 129 | WP_277850853.1 | hypothetical protein | - |
| QFC96_RS03575 (QFC96_03575) | - | 677686..678150 (+) | 465 | WP_283534042.1 | DUF1064 domain-containing protein | - |
| QFC96_RS03580 (QFC96_03580) | - | 678162..678365 (+) | 204 | WP_283534041.1 | hypothetical protein | - |
| QFC96_RS03585 (QFC96_03585) | - | 678385..678903 (+) | 519 | WP_283534040.1 | hypothetical protein | - |
| QFC96_RS03590 (QFC96_03590) | - | 678917..679099 (+) | 183 | WP_283534039.1 | hypothetical protein | - |
| QFC96_RS03595 (QFC96_03595) | - | 679099..679335 (+) | 237 | WP_283534038.1 | helix-turn-helix transcriptional regulator | - |
| QFC96_RS03600 (QFC96_03600) | ssb | 679322..679786 (+) | 465 | WP_283534037.1 | single-stranded DNA-binding protein | Machinery gene |
| QFC96_RS03605 (QFC96_03605) | - | 679870..680319 (+) | 450 | WP_283534036.1 | sigma-70 family RNA polymerase sigma factor | - |
| QFC96_RS03610 (QFC96_03610) | - | 680459..681094 (+) | 636 | WP_283534035.1 | hypothetical protein | - |
| QFC96_RS03615 (QFC96_03615) | - | 681431..681733 (+) | 303 | WP_283534034.1 | hypothetical protein | - |
| QFC96_RS03620 (QFC96_03620) | - | 681840..682175 (+) | 336 | WP_283534340.1 | hypothetical protein | - |
| QFC96_RS03625 (QFC96_03625) | - | 682150..683832 (+) | 1683 | WP_283534341.1 | terminase TerL endonuclease subunit | - |
| QFC96_RS03630 (QFC96_03630) | - | 683851..685053 (+) | 1203 | WP_283534342.1 | phage portal protein | - |
| QFC96_RS03635 (QFC96_03635) | - | 685016..685849 (+) | 834 | WP_283534343.1 | head maturation protease, ClpP-related | - |
| QFC96_RS03640 (QFC96_03640) | - | 685862..686983 (+) | 1122 | WP_283534029.1 | phage major capsid protein | - |
| QFC96_RS03645 (QFC96_03645) | - | 686995..687231 (+) | 237 | WP_283534028.1 | Ig-like domain-containing protein | - |
| QFC96_RS03650 (QFC96_03650) | - | 687242..687541 (+) | 300 | WP_283534027.1 | head-tail connector protein | - |
| QFC96_RS03655 (QFC96_03655) | - | 687528..687923 (+) | 396 | WP_283534344.1 | head-tail adaptor protein | - |
| QFC96_RS03660 (QFC96_03660) | - | 687904..688260 (+) | 357 | WP_283534345.1 | hypothetical protein | - |
| QFC96_RS03665 (QFC96_03665) | - | 688250..688648 (+) | 399 | WP_283534346.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QFC96_RS03670 (QFC96_03670) | - | 688663..689247 (+) | 585 | WP_283534347.1 | phage tail protein | - |
| QFC96_RS03675 (QFC96_03675) | - | 689304..689492 (+) | 189 | Protein_700 | Ig-like domain-containing protein | - |
| QFC96_RS03680 (QFC96_03680) | - | 689561..689923 (+) | 363 | WP_283534348.1 | hypothetical protein | - |
| QFC96_RS03685 (QFC96_03685) | - | 689974..690096 (+) | 123 | WP_283534349.1 | hypothetical protein | - |
| QFC96_RS03690 (QFC96_03690) | - | 690114..693335 (+) | 3222 | WP_283534350.1 | phage tail tape measure protein | - |
| QFC96_RS03695 (QFC96_03695) | - | 693335..694021 (+) | 687 | WP_283534351.1 | hypothetical protein | - |
| QFC96_RS03700 (QFC96_03700) | - | 694018..698130 (+) | 4113 | WP_283534019.1 | phage tail spike protein | - |
| QFC96_RS03705 (QFC96_03705) | - | 698127..698558 (+) | 432 | WP_283534018.1 | DUF1617 family protein | - |
| QFC96_RS03710 (QFC96_03710) | - | 698558..698785 (+) | 228 | WP_283534017.1 | hypothetical protein | - |
| QFC96_RS03715 (QFC96_03715) | - | 698801..699073 (+) | 273 | WP_101377749.1 | hypothetical protein | - |
| QFC96_RS03720 (QFC96_03720) | - | 699078..699332 (+) | 255 | WP_213923378.1 | phage holin | - |
| QFC96_RS03725 (QFC96_03725) | - | 699332..700141 (+) | 810 | WP_283534352.1 | N-acetylmuramoyl-L-alanine amidase | - |
| QFC96_RS03730 (QFC96_03730) | - | 700392..700718 (+) | 327 | WP_004270346.1 | MazG-like family protein | - |
| QFC96_RS03735 (QFC96_03735) | - | 700974..701174 (+) | 201 | WP_004270328.1 | cold-shock protein | - |
| QFC96_RS03740 (QFC96_03740) | - | 701329..702051 (-) | 723 | WP_283534353.1 | SDR family oxidoreductase | - |
| QFC96_RS03745 (QFC96_03745) | - | 702341..702778 (+) | 438 | WP_004270330.1 | universal stress protein | - |
| QFC96_RS03750 (QFC96_03750) | - | 702941..704119 (+) | 1179 | WP_215499351.1 | serine hydrolase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16937.58 Da Isoelectric Point: 7.9298
>NTDB_id=821372 QFC96_RS03600 WP_283534037.1 679322..679786(+) (ssb) [Latilactobacillus curvatus strain ZHA1]
MKMNSANLIGNLTRDPELKYSQSGMALMSCNIAVRRQFKDKQSGDYESDFINIKAFGKTAELFSNSFRKGSKVGVTGTIQ
TGRYENNQGQTVYTTDIIVNSMTFVEAKSSDGGSNSNQTNYTSNGQTGYNKPNNQSQTYNNGQPIDISDDQLPV
MKMNSANLIGNLTRDPELKYSQSGMALMSCNIAVRRQFKDKQSGDYESDFINIKAFGKTAELFSNSFRKGSKVGVTGTIQ
TGRYENNQGQTVYTTDIIVNSMTFVEAKSSDGGSNSNQTNYTSNGQTGYNKPNNQSQTYNNGQPIDISDDQLPV
Nucleotide
Download Length: 465 bp
>NTDB_id=821372 QFC96_RS03600 WP_283534037.1 679322..679786(+) (ssb) [Latilactobacillus curvatus strain ZHA1]
ATGAAGATGAATAGCGCTAATTTAATTGGTAACTTGACGCGTGATCCTGAATTGAAATACAGTCAAAGCGGCATGGCGTT
GATGAGTTGTAACATTGCTGTTAGACGGCAGTTTAAAGATAAACAAAGTGGTGATTACGAATCTGACTTTATTAATATCA
AAGCATTTGGCAAAACAGCCGAGTTGTTCAGTAATAGTTTCCGCAAAGGTTCAAAGGTTGGTGTGACTGGTACGATTCAA
ACCGGCCGTTACGAAAATAATCAAGGTCAAACTGTTTACACCACCGACATCATTGTTAATTCGATGACGTTCGTTGAAGC
TAAAAGCAGTGATGGCGGTTCGAATAGCAATCAGACGAATTATACTAGCAACGGCCAGACTGGTTACAATAAGCCAAACA
ATCAATCGCAAACCTATAATAATGGACAACCGATTGATATAAGCGATGATCAGTTACCGGTTTAG
ATGAAGATGAATAGCGCTAATTTAATTGGTAACTTGACGCGTGATCCTGAATTGAAATACAGTCAAAGCGGCATGGCGTT
GATGAGTTGTAACATTGCTGTTAGACGGCAGTTTAAAGATAAACAAAGTGGTGATTACGAATCTGACTTTATTAATATCA
AAGCATTTGGCAAAACAGCCGAGTTGTTCAGTAATAGTTTCCGCAAAGGTTCAAAGGTTGGTGTGACTGGTACGATTCAA
ACCGGCCGTTACGAAAATAATCAAGGTCAAACTGTTTACACCACCGACATCATTGTTAATTCGATGACGTTCGTTGAAGC
TAAAAGCAGTGATGGCGGTTCGAATAGCAATCAGACGAATTATACTAGCAACGGCCAGACTGGTTACAATAAGCCAAACA
ATCAATCGCAAACCTATAATAATGGACAACCGATTGATATAAGCGATGATCAGTTACCGGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.882 |
100 |
0.506 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
37.427 |
100 |
0.416 |