Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QE210_RS22060 Genome accession   NZ_CP123504
Coordinates   3028545..3028706 (-) Length   53 a.a.
NCBI ID   WP_342358136.1    Uniprot ID   -
Organism   Arsenophonus nasoniae strain aPv     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3023545..3033706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE210_RS15110 (QE210_15035) - 3025965..3026495 (+) 531 WP_026823145.1 gamma carbonic anhydrase family protein -
  QE210_RS15115 (QE210_15040) aroE 3026566..3027387 (-) 822 WP_026823146.1 shikimate dehydrogenase -
  QE210_RS15120 (QE210_15045) - 3027393..3027962 (-) 570 WP_026823147.1 Sua5/YciO/YrdC/YwlC family protein -
  QE210_RS15125 (QE210_15050) - 3027986..3028528 (-) 543 WP_248604881.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QE210_RS22060 dprA 3028545..3028706 (-) 162 WP_342358136.1 hypothetical protein Machinery gene
  QE210_RS15130 (QE210_15055) dprA 3028755..3029591 (-) 837 WP_342358137.1 DNA-processing protein DprA -
  QE210_RS15135 (QE210_15060) def 3029744..3030259 (+) 516 WP_026823150.1 peptide deformylase -
  QE210_RS15140 (QE210_15065) fmt 3030292..3031263 (+) 972 WP_026823151.1 methionyl-tRNA formyltransferase -
  QE210_RS15145 (QE210_15070) rsmB 3031314..3032594 (+) 1281 WP_280624713.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 5985.99 Da        Isoelectric Point: 4.2447

>NTDB_id=821238 QE210_RS22060 WP_342358136.1 3028545..3028706(-) (dprA) [Arsenophonus nasoniae strain aPv]
MNNILRYINFEPTPIDLIAERSGLSVIEVSAQLLEFELMGKVIFVSGGYIRVE

Nucleotide


Download         Length: 162 bp        

>NTDB_id=821238 QE210_RS22060 WP_342358136.1 3028545..3028706(-) (dprA) [Arsenophonus nasoniae strain aPv]
ATGAACAATATATTGCGTTATATTAATTTTGAACCAACGCCTATAGATTTAATTGCTGAAAGAAGTGGCTTATCGGTTAT
TGAGGTATCTGCTCAATTATTGGAATTTGAATTAATGGGTAAAGTTATCTTTGTGTCTGGTGGATATATTAGAGTCGAGT
AA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

50.98

96.226

0.491
  dprA Vibrio campbellii strain DS40M4

52.083

90.566

0.472
  dprA Vibrio cholerae strain A1552

47.917

90.566

0.434