Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R4540_RS01485 Genome accession   NZ_CP137135
Coordinates   326403..327128 (-) Length   241 a.a.
NCBI ID   WP_000877199.1    Uniprot ID   -
Organism   Vibrio cholerae V52     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321403..332128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4540_RS01470 (R4540_01470) - 323039..324079 (-) 1041 WP_000595744.1 spermidine/putrescine ABC transporter substrate-binding protein -
  R4540_RS01475 (R4540_01475) pheA 324261..325436 (-) 1176 WP_000130284.1 prephenate dehydratase -
  R4540_RS01480 (R4540_01480) hpf 325676..326002 (-) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R4540_RS01485 (R4540_01485) comL 326403..327128 (-) 726 WP_000877199.1 outer membrane protein assembly factor BamD Machinery gene
  R4540_RS01490 (R4540_01490) rluD 327283..328257 (+) 975 WP_000941106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R4540_RS01495 (R4540_01495) pgeF 328260..328982 (+) 723 WP_000602850.1 peptidoglycan editing factor PgeF -
  R4540_RS01500 (R4540_01500) clpC 329107..331680 (+) 2574 WP_001235061.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27861.61 Da        Isoelectric Point: 4.9916

>NTDB_id=820305 R4540_RS01485 WP_000877199.1 326403..327128(-) (comL) [Vibrio cholerae V52]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARQSLEIQLEAYQQLGLTDAVERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=820305 R4540_RS01485 WP_000877199.1 326403..327128(-) (comL) [Vibrio cholerae V52]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATTTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACTTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAGCTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCGGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTCAATCCTTAG
AAATCCAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGGTAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378