Detailed information NTG0082021

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: R8613_RS11160
• Genome accession: NZ_AP026919
• Coordinates: 2132184..2133281 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266660.1
• Uniprot ID: Q97N44
• Organism: Streptococcus pneumoniae strain PZ900700012
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2127184..2138281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8613_RS11135 (PC0012_21340)	pgsA	2127705..2128250 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
R8613_RS11140 (PC0012_21350)	rodZ	2128261..2129082 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
R8613_RS11145 (PC0012_21360)	yfmH	2129124..2130407 (-)	1284	WP_000170217.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
R8613_RS11150 (PC0012_21370)	yfmF	2130404..2131654 (-)	1251	WP_000424271.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
R8613_RS11155 (PC0012_21380)	yaaA	2131813..2132181 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
R8613_RS11160 (PC0012_21390)	recF	2132184..2133281 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
R8613_RS11165 (PC0012_21400)	guaB	2133332..2134810 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
R8613_RS11170 (PC0012_21410)	trpS	2134962..2135987 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
R8613_RS11175 (PC0012_21420)	-	2136193..2137815 (+)	1623	WP_000958769.1	ABC-F family ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41900.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=82021 R8613_RS11160 WP_000266660.1 2132184..2133281(+) (recF) [Streptococcus pneumoniae strain PZ900700012]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=82021 R8613_RS11160 WP_000266660.1 2132184..2133281(+) (recF) [Streptococcus pneumoniae strain PZ900700012]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q97N44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46