Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QEP69_RS27500 Genome accession   NZ_CP123209
Coordinates   6075383..6076099 (+) Length   238 a.a.
NCBI ID   WP_010214839.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. aesculi strain 1804     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6070383..6081099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP69_RS27480 - 6070463..6071086 (+) 624 WP_005733933.1 glutathione S-transferase -
  QEP69_RS27485 - 6071270..6072202 (+) 933 WP_005733932.1 ABC transporter ATP-binding protein -
  QEP69_RS27490 - 6072199..6072987 (+) 789 WP_002552673.1 ABC transporter permease -
  QEP69_RS27495 comA 6073124..6075340 (+) 2217 WP_031599463.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QEP69_RS27500 exbB 6075383..6076099 (+) 717 WP_010214839.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QEP69_RS27505 - 6076096..6076527 (+) 432 WP_005733929.1 biopolymer transporter ExbD -
  QEP69_RS27510 lpxK 6076527..6077522 (+) 996 WP_002552678.1 tetraacyldisaccharide 4'-kinase -
  QEP69_RS27515 - 6077540..6077725 (+) 186 WP_002552679.1 Trm112 family protein -
  QEP69_RS27520 kdsB 6077722..6078486 (+) 765 WP_005733926.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QEP69_RS27525 murB 6078521..6079540 (+) 1020 WP_005733925.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25818.38 Da        Isoelectric Point: 7.9113

>NTDB_id=820033 QEP69_RS27500 WP_010214839.1 6075383..6076099(+) (exbB) [Pseudomonas amygdali pv. aesculi strain 1804]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=820033 QEP69_RS27500 WP_010214839.1 6075383..6076099(+) (exbB) [Pseudomonas amygdali pv. aesculi strain 1804]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGC
CGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGAC
TCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAATTCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTG
GCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTA
CTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCG
CTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693