Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   R4707_RS05730 Genome accession   NZ_CP137113
Coordinates   1073612..1074709 (+) Length   365 a.a.
NCBI ID   WP_001866149.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1068612..1079709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS05705 pgsA 1069133..1069678 (-) 546 WP_000712141.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R4707_RS05710 rodZ 1069689..1070510 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  R4707_RS05715 yfmH 1070552..1071835 (-) 1284 WP_000170190.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  R4707_RS05720 yfmF 1071832..1073082 (-) 1251 WP_050091322.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  R4707_RS05725 yaaA 1073241..1073609 (+) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  R4707_RS05730 recF 1073612..1074709 (+) 1098 WP_001866149.1 DNA replication/repair protein RecF Machinery gene
  R4707_RS05735 guaB 1074759..1076237 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  R4707_RS05740 trpS 1076389..1077414 (-) 1026 WP_000165445.1 tryptophan--tRNA ligase -
  R4707_RS05745 - 1077620..1079242 (+) 1623 WP_081543043.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41916.00 Da        Isoelectric Point: 9.0596

>NTDB_id=820001 R4707_RS05730 WP_001866149.1 1073612..1074709(+) (recF) [Streptococcus pneumoniae strain ZGX]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNTTDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=820001 R4707_RS05730 WP_001866149.1 1073612..1074709(+) (recF) [Streptococcus pneumoniae strain ZGX]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAGCTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGTTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATACAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.178

100

0.992
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46