Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QAO40_RS08475 Genome accession   NZ_CP123166
Coordinates   1744133..1744819 (-) Length   228 a.a.
NCBI ID   WP_001802022.1    Uniprot ID   A0A7U7EYP5
Organism   Staphylococcus aureus strain BE-MSSA5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739133..1749819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO40_RS08455 (QAO40_08485) rpsT 1740047..1740298 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QAO40_RS08460 (QAO40_08490) holA 1740343..1741317 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  QAO40_RS08465 (QAO40_08495) comEC 1741374..1743575 (-) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QAO40_RS08470 (QAO40_08500) - 1743580..1744041 (-) 462 WP_000439693.1 ComE operon protein 2 -
  QAO40_RS08475 (QAO40_08505) comEA 1744133..1744819 (-) 687 WP_001802022.1 ComEA family DNA-binding protein Machinery gene
  QAO40_RS08480 (QAO40_08510) - 1744859..1745575 (-) 717 WP_000084830.1 class I SAM-dependent DNA methyltransferase -
  QAO40_RS08485 (QAO40_08515) rsfS 1745578..1745931 (-) 354 WP_103150989.1 ribosome silencing factor -
  QAO40_RS08490 (QAO40_08520) yqeK 1745932..1746516 (-) 585 WP_411896407.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QAO40_RS08495 (QAO40_08525) nadD 1746506..1747075 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QAO40_RS08500 (QAO40_08530) yhbY 1747078..1747368 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  QAO40_RS08505 (QAO40_08535) aroE 1747372..1748178 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  QAO40_RS08510 (QAO40_08540) yqeH 1748192..1749292 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25900.65 Da        Isoelectric Point: 9.6751

>NTDB_id=819874 QAO40_RS08475 WP_001802022.1 1744133..1744819(-) (comEA) [Staphylococcus aureus strain BE-MSSA5]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=819874 QAO40_RS08475 WP_001802022.1 1744133..1744819(-) (comEA) [Staphylococcus aureus strain BE-MSSA5]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

100

1
  comEA Staphylococcus aureus MW2

97.368

100

0.974