Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAY77_RS10185 Genome accession   NZ_CP123162
Coordinates   2068134..2068529 (-) Length   131 a.a.
NCBI ID   WP_048665209.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2063134..2073529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY77_RS10160 (QAY77_10160) thiE 2063734..2064375 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  QAY77_RS10165 (QAY77_10165) thiM 2064377..2065168 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  QAY77_RS10170 (QAY77_10170) thiD 2065152..2065982 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAY77_RS10175 (QAY77_10175) tenA 2065975..2066664 (-) 690 WP_000396077.1 thiaminase II -
  QAY77_RS10180 (QAY77_10180) sceD 2067050..2067745 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  QAY77_RS10185 (QAY77_10185) ssb 2068134..2068529 (-) 396 WP_048665209.1 single-stranded DNA-binding protein Machinery gene
  QAY77_RS10190 (QAY77_10190) - 2068723..2069163 (+) 441 WP_000846746.1 YwpF-like family protein -
  QAY77_RS10195 (QAY77_10195) fabZ 2069221..2069661 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAY77_RS10200 (QAY77_10200) murA 2069695..2070960 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAY77_RS10205 (QAY77_10205) - 2071071..2071304 (-) 234 WP_000384523.1 DUF1146 family protein -
  QAY77_RS10210 (QAY77_10210) - 2071436..2071528 (-) 93 WP_001790611.1 hypothetical protein -
  QAY77_RS10215 (QAY77_10215) - 2071866..2072270 (-) 405 WP_411888674.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=819802 QAY77_RS10185 WP_048665209.1 2068134..2068529(-) (ssb) [Staphylococcus aureus strain BE-MSSA7]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEIISDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=819802 QAY77_RS10185 WP_048665209.1 2068134..2068529(-) (ssb) [Staphylococcus aureus strain BE-MSSA7]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTATCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985