Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QAO39_RS10565 Genome accession   NZ_CP123158
Coordinates   2105707..2106276 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2100707..2111276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS10525 (QAO39_10505) - 2101181..2101789 (-) 609 WP_165469017.1 class I SAM-dependent methyltransferase -
  QAO39_RS10530 (QAO39_10510) rplL 2101964..2102332 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QAO39_RS10535 (QAO39_10515) rplJ 2102375..2102875 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QAO39_RS10540 (QAO39_10520) rplA 2103147..2103839 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QAO39_RS10545 (QAO39_10525) rplK 2104047..2104469 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QAO39_RS10550 (QAO39_10530) nusG 2104650..2105198 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QAO39_RS10555 (QAO39_10535) secE 2105211..2105393 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QAO39_RS10560 (QAO39_10540) rpmG 2105449..2105592 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QAO39_RS10565 (QAO39_10545) sigH 2105707..2106276 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  QAO39_RS10570 (QAO39_10550) - 2106357..2106881 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QAO39_RS10575 (QAO39_10555) rlmB 2106881..2107627 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QAO39_RS10580 (QAO39_10560) - 2107635..2108039 (-) 405 WP_165469015.1 Mini-ribonuclease 3 -
  QAO39_RS10585 (QAO39_10565) cysS 2108032..2109432 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QAO39_RS10590 (QAO39_10570) cysE 2109416..2110063 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=819716 QAO39_RS10565 WP_000872876.1 2105707..2106276(-) (sigH) [Staphylococcus aureus strain BE-MSSA9]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=819716 QAO39_RS10565 WP_000872876.1 2105707..2106276(-) (sigH) [Staphylococcus aureus strain BE-MSSA9]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984