Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QAO39_RS08340 Genome accession   NZ_CP123158
Coordinates   1673505..1674491 (-) Length   328 a.a.
NCBI ID   WP_165468727.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1668505..1679491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS08315 (QAO39_08300) - 1668765..1669112 (-) 348 WP_165468725.1 hypothetical protein -
  QAO39_RS08320 (QAO39_08305) - 1669298..1669891 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  QAO39_RS08325 (QAO39_08310) - 1669995..1670360 (+) 366 WP_000214068.1 truncated hemoglobin YjbI -
  QAO39_RS08330 (QAO39_08315) yjbH 1670383..1671189 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  QAO39_RS08335 (QAO39_08320) pepF 1671649..1673457 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  QAO39_RS08340 (QAO39_08325) coiA 1673505..1674491 (-) 987 WP_165468727.1 competence protein CoiA Machinery gene
  QAO39_RS08345 (QAO39_08330) mecA 1674612..1675331 (-) 720 WP_001217728.1 adaptor protein MecA -
  QAO39_RS08350 (QAO39_08335) spxA 1675702..1676097 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  QAO39_RS08355 (QAO39_08340) trpS 1676392..1677381 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QAO39_RS08360 (QAO39_08345) opp4C 1677423..1678304 (-) 882 WP_165468728.1 oligopeptide ABC transporter permease -
  QAO39_RS08365 (QAO39_08350) opp4B 1678316..1679278 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38821.43 Da        Isoelectric Point: 9.5881

>NTDB_id=819710 QAO39_RS08340 WP_165468727.1 1673505..1674491(-) (coiA) [Staphylococcus aureus strain BE-MSSA9]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=819710 QAO39_RS08340 WP_165468727.1 1673505..1674491(-) (coiA) [Staphylococcus aureus strain BE-MSSA9]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.476

100

0.985
  coiA Staphylococcus aureus MW2

98.476

100

0.985