Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QAO42_RS07620 Genome accession   NZ_CP123139
Coordinates   1505071..1505640 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MRSA22     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500071..1510640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO42_RS07580 (QAO42_07555) - 1500545..1501153 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QAO42_RS07585 (QAO42_07560) rplL 1501328..1501696 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QAO42_RS07590 (QAO42_07565) rplJ 1501739..1502239 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QAO42_RS07595 (QAO42_07570) rplA 1502511..1503203 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QAO42_RS07600 (QAO42_07575) rplK 1503411..1503833 (-) 423 WP_001085795.1 50S ribosomal protein L11 -
  QAO42_RS07605 (QAO42_07580) nusG 1504014..1504562 (-) 549 WP_001288298.1 transcription termination/antitermination protein NusG -
  QAO42_RS07610 (QAO42_07585) secE 1504575..1504757 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QAO42_RS07615 (QAO42_07590) rpmG 1504813..1504956 (-) 144 WP_072519097.1 50S ribosomal protein L33 -
  QAO42_RS07620 (QAO42_07595) sigH 1505071..1505640 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QAO42_RS07625 (QAO42_07600) - 1505721..1506245 (-) 525 WP_000664732.1 NYN domain-containing protein -
  QAO42_RS07630 (QAO42_07605) rlmB 1506245..1506991 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QAO42_RS07635 (QAO42_07610) - 1506999..1507403 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QAO42_RS07640 (QAO42_07615) cysS 1507396..1508796 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QAO42_RS07645 (QAO42_07620) cysE 1508780..1509427 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=819409 QAO42_RS07620 WP_000872873.1 1505071..1505640(-) (sigH) [Staphylococcus aureus strain GE-MRSA22]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=819409 QAO42_RS07620 WP_000872873.1 1505071..1505640(-) (sigH) [Staphylococcus aureus strain GE-MRSA22]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984