Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QAO42_RS02185 Genome accession   NZ_CP123139
Coordinates   402356..403042 (+) Length   228 a.a.
NCBI ID   WP_075583650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MRSA22     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397356..408042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO42_RS02150 (QAO42_02130) yqeH 397883..398983 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  QAO42_RS02155 (QAO42_02135) aroE 398997..399803 (+) 807 WP_000666749.1 shikimate dehydrogenase -
  QAO42_RS02160 (QAO42_02140) yhbY 399807..400097 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  QAO42_RS02165 (QAO42_02145) nadD 400100..400669 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QAO42_RS02170 (QAO42_02150) yqeK 400659..401243 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QAO42_RS02175 (QAO42_02155) rsfS 401244..401597 (+) 354 WP_001088022.1 ribosome silencing factor -
  QAO42_RS02180 (QAO42_02160) - 401600..402316 (+) 717 WP_000084824.1 class I SAM-dependent DNA methyltransferase -
  QAO42_RS02185 (QAO42_02165) comEA 402356..403042 (+) 687 WP_075583650.1 ComEA family DNA-binding protein Machinery gene
  QAO42_RS02190 (QAO42_02170) - 403134..403595 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QAO42_RS02195 (QAO42_02175) comEC 403600..405801 (+) 2202 WP_001670363.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QAO42_RS02200 (QAO42_02180) holA 405858..406832 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  QAO42_RS02205 (QAO42_02185) rpsT 406877..407128 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25787.53 Da        Isoelectric Point: 9.6753

>NTDB_id=819390 QAO42_RS02185 WP_075583650.1 402356..403042(+) (comEA) [Staphylococcus aureus strain GE-MRSA22]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=819390 QAO42_RS02185 WP_075583650.1 402356..403042(+) (comEA) [Staphylococcus aureus strain GE-MRSA22]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.123

100

0.991
  comEA Staphylococcus aureus N315

98.246

100

0.982