Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QAO23_RS08195 Genome accession   NZ_CP123130
Coordinates   1677295..1677981 (+) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA29     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1672295..1682981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO23_RS08160 (QAO23_08165) yqeH 1672822..1673922 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  QAO23_RS08165 (QAO23_08170) aroE 1673936..1674742 (+) 807 WP_000666767.1 shikimate dehydrogenase -
  QAO23_RS08170 (QAO23_08175) yhbY 1674746..1675036 (+) 291 WP_000955233.1 ribosome assembly RNA-binding protein YhbY -
  QAO23_RS08175 (QAO23_08180) nadD 1675039..1675608 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QAO23_RS08180 (QAO23_08185) yqeK 1675598..1676182 (+) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QAO23_RS08185 (QAO23_08190) rsfS 1676183..1676536 (+) 354 WP_001088020.1 ribosome silencing factor -
  QAO23_RS08190 (QAO23_08195) - 1676539..1677255 (+) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  QAO23_RS08195 (QAO23_08200) comEA 1677295..1677981 (+) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  QAO23_RS08200 (QAO23_08205) - 1678073..1678534 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QAO23_RS08205 (QAO23_08210) comEC 1678539..1680740 (+) 2202 WP_000967503.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QAO23_RS08210 (QAO23_08215) holA 1680797..1681771 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  QAO23_RS08215 (QAO23_08220) rpsT 1681816..1682067 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=819234 QAO23_RS08195 WP_078055782.1 1677295..1677981(+) (comEA) [Staphylococcus aureus strain GE-MSSA29]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=819234 QAO23_RS08195 WP_078055782.1 1677295..1677981(+) (comEA) [Staphylococcus aureus strain GE-MSSA29]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982