Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QAO23_RS00155 Genome accession   NZ_CP123130
Coordinates   40221..40790 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain GE-MSSA29     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 35221..45790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO23_RS00115 (QAO23_00115) - 35695..36303 (-) 609 WP_000020296.1 class I SAM-dependent methyltransferase -
  QAO23_RS00120 (QAO23_00120) rplL 36478..36846 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QAO23_RS00125 (QAO23_00125) rplJ 36889..37389 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QAO23_RS00130 (QAO23_00130) rplA 37661..38353 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QAO23_RS00135 (QAO23_00135) rplK 38561..38983 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QAO23_RS00140 (QAO23_00140) nusG 39164..39712 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QAO23_RS00145 (QAO23_00145) secE 39725..39907 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QAO23_RS00150 (QAO23_00150) rpmG 39963..40106 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QAO23_RS00155 (QAO23_00155) sigH 40221..40790 (-) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  QAO23_RS00160 (QAO23_00160) - 40871..41395 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QAO23_RS00165 (QAO23_00165) rlmB 41395..42141 (-) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QAO23_RS00170 (QAO23_00170) - 42149..42553 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  QAO23_RS00175 (QAO23_00175) cysS 42546..43946 (-) 1401 WP_000631977.1 cysteine--tRNA ligase -
  QAO23_RS00180 (QAO23_00180) cysE 43930..44577 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=819214 QAO23_RS00155 WP_000872872.1 40221..40790(-) (sigH) [Staphylococcus aureus strain GE-MSSA29]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=819214 QAO23_RS00155 WP_000872872.1 40221..40790(-) (sigH) [Staphylococcus aureus strain GE-MSSA29]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979