Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4702_RS07570 Genome accession   NZ_CP137106
Coordinates   1457856..1458566 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain 16P4028     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1452856..1463566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS07550 amiD 1453361..1454287 (+) 927 WP_044812043.1 oligopeptide ABC transporter permease OppC Regulator
  R4702_RS07555 amiE 1454296..1455363 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R4702_RS07560 - 1455374..1456300 (+) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  R4702_RS07565 - 1456375..1457701 (-) 1327 Protein_1451 transposase -
  R4702_RS07570 treR 1457856..1458566 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4702_RS07575 treP 1458751..1460718 (+) 1968 WP_050245235.1 PTS system trehalose-specific EIIBC component -
  R4702_RS07580 treC 1460896..1462521 (+) 1626 WP_050200000.1 alpha,alpha-phosphotrehalase -
  R4702_RS07585 - 1462777..1463025 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=819192 R4702_RS07570 WP_000760673.1 1457856..1458566(-) (treR) [Streptococcus pneumoniae strain 16P4028]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=819192 R4702_RS07570 WP_000760673.1 1457856..1458566(-) (treR) [Streptococcus pneumoniae strain 16P4028]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593