Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QAO33_RS08085 Genome accession   NZ_CP123123
Coordinates   1665982..1666968 (+) Length   328 a.a.
NCBI ID   WP_000959285.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660982..1671968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO33_RS08060 (QAO33_08065) opp4B 1661195..1662157 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  QAO33_RS08065 (QAO33_08070) opp4C 1662169..1663050 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  QAO33_RS08070 (QAO33_08075) trpS 1663092..1664081 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QAO33_RS08075 (QAO33_08080) spxA 1664376..1664771 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QAO33_RS08080 (QAO33_08085) mecA 1665142..1665861 (+) 720 WP_001217728.1 adaptor protein MecA -
  QAO33_RS08085 (QAO33_08090) coiA 1665982..1666968 (+) 987 WP_000959285.1 competence protein CoiA Machinery gene
  QAO33_RS08090 (QAO33_08095) pepF 1667016..1668824 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  QAO33_RS08095 (QAO33_08100) yjbH 1669284..1670090 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  QAO33_RS08100 (QAO33_08105) - 1670113..1670478 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QAO33_RS08105 (QAO33_08110) - 1670582..1671175 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  QAO33_RS08110 (QAO33_08115) - 1671361..1671708 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38811.37 Da        Isoelectric Point: 9.5840

>NTDB_id=819105 QAO33_RS08085 WP_000959285.1 1665982..1666968(+) (coiA) [Staphylococcus aureus strain GE-MSSA33]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=819105 QAO33_RS08085 WP_000959285.1 1665982..1666968(+) (coiA) [Staphylococcus aureus strain GE-MSSA33]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.171

100

0.982
  coiA Staphylococcus aureus N315

98.171

100

0.982