Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAO33_RS00420 Genome accession   NZ_CP123123
Coordinates   87048..87443 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 82048..92443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO33_RS00395 (QAO33_00395) thiE 82510..83151 (-) 642 WP_000483164.1 thiamine phosphate synthase -
  QAO33_RS00400 (QAO33_00400) thiM 83153..83944 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QAO33_RS00405 (QAO33_00405) thiD 83928..84758 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAO33_RS00410 (QAO33_00410) tenA 84751..85440 (-) 690 WP_000396072.1 thiaminase II -
  QAO33_RS00415 (QAO33_00415) sceD 85964..86659 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  QAO33_RS00420 (QAO33_00420) ssb 87048..87443 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QAO33_RS00425 (QAO33_00425) - 87637..88077 (+) 441 WP_000846746.1 YwpF-like family protein -
  QAO33_RS00430 (QAO33_00430) fabZ 88137..88577 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAO33_RS00435 (QAO33_00435) murA 88611..89876 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAO33_RS00440 (QAO33_00440) - 89987..90220 (-) 234 WP_000384523.1 DUF1146 family protein -
  QAO33_RS00445 (QAO33_00445) - 90352..90444 (-) 93 WP_001790611.1 hypothetical protein -
  QAO33_RS00450 (QAO33_00450) - 90780..91184 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=819090 QAO33_RS00420 WP_000932694.1 87048..87443(-) (ssb) [Staphylococcus aureus strain GE-MSSA33]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=819090 QAO33_RS00420 WP_000932694.1 87048..87443(-) (ssb) [Staphylococcus aureus strain GE-MSSA33]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992