Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QAO18_RS07380 Genome accession   NZ_CP123121
Coordinates   1473202..1473771 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA38     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468202..1478771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO18_RS07340 (QAO18_07325) - 1468676..1469284 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QAO18_RS07345 (QAO18_07330) rplL 1469459..1469827 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QAO18_RS07350 (QAO18_07335) rplJ 1469870..1470370 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QAO18_RS07355 (QAO18_07340) rplA 1470642..1471334 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QAO18_RS07360 (QAO18_07345) rplK 1471542..1471964 (-) 423 WP_001085795.1 50S ribosomal protein L11 -
  QAO18_RS07365 (QAO18_07350) nusG 1472145..1472693 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QAO18_RS07370 (QAO18_07355) secE 1472706..1472888 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QAO18_RS07375 (QAO18_07360) rpmG 1472944..1473087 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QAO18_RS07380 (QAO18_07365) sigH 1473202..1473771 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QAO18_RS07385 (QAO18_07370) - 1473852..1474376 (-) 525 WP_000664732.1 NYN domain-containing protein -
  QAO18_RS07390 (QAO18_07375) rlmB 1474376..1475122 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QAO18_RS07395 (QAO18_07380) - 1475130..1475534 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QAO18_RS07400 (QAO18_07385) cysS 1475527..1476927 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QAO18_RS07405 (QAO18_07390) cysE 1476911..1477558 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=819076 QAO18_RS07380 WP_000872873.1 1473202..1473771(-) (sigH) [Staphylococcus aureus strain GE-MSSA38]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=819076 QAO18_RS07380 WP_000872873.1 1473202..1473771(-) (sigH) [Staphylococcus aureus strain GE-MSSA38]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984