Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4699_RS02355 Genome accession   NZ_CP137105
Coordinates   461104..461826 (+) Length   240 a.a.
NCBI ID   WP_050104702.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 456104..466826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS02335 - 456189..457811 (+) 1623 WP_050104700.1 polysaccharide biosynthesis protein -
  R4699_RS02340 amiA 458015..459973 (+) 1959 WP_050104701.1 peptide ABC transporter substrate-binding protein Regulator
  R4699_RS02345 - 460145..460378 (+) 234 WP_000768985.1 hypothetical protein -
  R4699_RS02350 - 460408..461079 (+) 672 WP_235815205.1 ABC transporter ATP-binding protein -
  R4699_RS02355 rcrP 461104..461826 (+) 723 WP_050104702.1 ABC transporter ATP-binding protein Regulator
  R4699_RS02360 - 461983..463077 (+) 1095 WP_000031974.1 cystathionine gamma-synthase -
  R4699_RS02365 - 463085..464251 (+) 1167 WP_000521369.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27220.09 Da        Isoelectric Point: 5.0355

>NTDB_id=819005 R4699_RS02355 WP_050104702.1 461104..461826(+) (rcrP) [Streptococcus pneumoniae strain 16H2092]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGYILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=819005 R4699_RS02355 WP_050104702.1 461104..461826(+) (rcrP) [Streptococcus pneumoniae strain 16H2092]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGATATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362