Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAY61_RS11305 Genome accession   NZ_CP123115
Coordinates   2271052..2271447 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MRSA43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2266052..2276447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY61_RS11280 (QAY61_11245) thiE 2266651..2267292 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  QAY61_RS11285 (QAY61_11250) thiM 2267294..2268085 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QAY61_RS11290 (QAY61_11255) thiD 2268069..2268899 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAY61_RS11295 (QAY61_11260) tenA 2268892..2269581 (-) 690 WP_000396069.1 thiaminase II -
  QAY61_RS11300 (QAY61_11265) sceD 2269968..2270663 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  QAY61_RS11305 (QAY61_11270) ssb 2271052..2271447 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QAY61_RS11310 (QAY61_11275) - 2271641..2272081 (+) 441 WP_000846750.1 YwpF-like family protein -
  QAY61_RS11315 (QAY61_11280) fabZ 2272139..2272579 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAY61_RS11320 (QAY61_11285) murA 2272613..2273878 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAY61_RS11325 (QAY61_11290) - 2273989..2274222 (-) 234 WP_000384523.1 DUF1146 family protein -
  QAY61_RS11330 (QAY61_11295) - 2274354..2274446 (-) 93 WP_031789435.1 hypothetical protein -
  QAY61_RS11335 (QAY61_11300) - 2274898..2275302 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=819001 QAY61_RS11305 WP_000932694.1 2271052..2271447(-) (ssb) [Staphylococcus aureus strain IT-MRSA43]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=819001 QAY61_RS11305 WP_000932694.1 2271052..2271447(-) (ssb) [Staphylococcus aureus strain IT-MRSA43]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992