Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAO20_RS11140 Genome accession   NZ_CP123106
Coordinates   2282760..2283155 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2277760..2288155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS11110 (QAO20_11080) - 2279018..2279422 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QAO20_RS11115 (QAO20_11085) - 2279761..2279854 (+) 94 Protein_2185 hypothetical protein -
  QAO20_RS11120 (QAO20_11090) - 2279986..2280219 (+) 234 WP_000384523.1 DUF1146 family protein -
  QAO20_RS11125 (QAO20_11095) murA 2280330..2281595 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAO20_RS11130 (QAO20_11100) fabZ 2281629..2282069 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAO20_RS11135 (QAO20_11105) - 2282126..2282566 (-) 441 WP_000846746.1 YwpF-like family protein -
  QAO20_RS11140 (QAO20_11110) ssb 2282760..2283155 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QAO20_RS11145 (QAO20_11115) sceD 2283544..2284239 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  QAO20_RS11150 (QAO20_11120) tenA 2284763..2285452 (+) 690 WP_000396060.1 thiaminase II -
  QAO20_RS11155 (QAO20_11125) thiD 2285445..2286275 (+) 831 WP_000594956.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAO20_RS11160 (QAO20_11130) thiM 2286259..2287050 (+) 792 WP_001108493.1 hydroxyethylthiazole kinase -
  QAO20_RS11165 (QAO20_11135) thiE 2287052..2287693 (+) 642 WP_000483149.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=818824 QAO20_RS11140 WP_000932694.1 2282760..2283155(+) (ssb) [Staphylococcus aureus strain IT-MSSA50]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=818824 QAO20_RS11140 WP_000932694.1 2282760..2283155(+) (ssb) [Staphylococcus aureus strain IT-MSSA50]
ATGCTAAATAAAATTGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAGTTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992