Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QAO20_RS05370 Genome accession   NZ_CP123106
Coordinates   1102321..1102890 (-) Length   189 a.a.
NCBI ID   WP_000872884.1    Uniprot ID   A0A8G2M8N0
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1097321..1107890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS05330 (QAO20_05300) - 1097795..1098403 (-) 609 WP_000020310.1 class I SAM-dependent methyltransferase -
  QAO20_RS05335 (QAO20_05305) rplL 1098578..1098946 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QAO20_RS05340 (QAO20_05310) rplJ 1098989..1099489 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QAO20_RS05345 (QAO20_05315) rplA 1099761..1100453 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QAO20_RS05350 (QAO20_05320) rplK 1100661..1101083 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QAO20_RS05355 (QAO20_05325) nusG 1101264..1101812 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QAO20_RS05360 (QAO20_05330) secE 1101825..1102007 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QAO20_RS05365 (QAO20_05335) rpmG 1102063..1102206 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QAO20_RS05370 (QAO20_05340) sigH 1102321..1102890 (-) 570 WP_000872884.1 sigma-70 family RNA polymerase sigma factor Regulator
  QAO20_RS05375 (QAO20_05345) - 1102971..1103495 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QAO20_RS05380 (QAO20_05350) rlmB 1103495..1104241 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QAO20_RS05385 (QAO20_05355) - 1104249..1104653 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QAO20_RS05390 (QAO20_05360) cysS 1104646..1106046 (-) 1401 WP_000631979.1 cysteine--tRNA ligase -
  QAO20_RS05395 (QAO20_05365) cysE 1106030..1106677 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23167.07 Da        Isoelectric Point: 9.6922

>NTDB_id=818814 QAO20_RS05370 WP_000872884.1 1102321..1102890(-) (sigH) [Staphylococcus aureus strain IT-MSSA50]
MKYDLTTQDSTLKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFRGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=818814 QAO20_RS05370 WP_000872884.1 1102321..1102890(-) (sigH) [Staphylococcus aureus strain IT-MSSA50]
TTGAAATATGATTTGACAACTCAAGACAGTACACTCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGAGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974