Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QAO28_RS02495 Genome accession   NZ_CP123104
Coordinates   450647..451333 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA53     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445647..456333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO28_RS02460 (QAO28_02460) yqeH 446174..447274 (+) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -
  QAO28_RS02465 (QAO28_02465) aroE 447288..448094 (+) 807 WP_000666757.1 shikimate dehydrogenase -
  QAO28_RS02470 (QAO28_02470) yhbY 448098..448388 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  QAO28_RS02475 (QAO28_02475) nadD 448391..448960 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QAO28_RS02480 (QAO28_02480) yqeK 448950..449534 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QAO28_RS02485 (QAO28_02485) rsfS 449535..449888 (+) 354 WP_001088020.1 ribosome silencing factor -
  QAO28_RS02490 (QAO28_02490) - 449891..450607 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  QAO28_RS02495 (QAO28_02495) comEA 450647..451333 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  QAO28_RS02500 (QAO28_02500) - 451425..451886 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QAO28_RS02505 (QAO28_02505) comEC 451891..454092 (+) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QAO28_RS02510 (QAO28_02510) holA 454149..455123 (+) 975 WP_001282561.1 DNA polymerase III subunit delta -
  QAO28_RS02515 (QAO28_02515) rpsT 455168..455419 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=818761 QAO28_RS02495 WP_001788928.1 450647..451333(+) (comEA) [Staphylococcus aureus strain IT-MSSA53]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=818761 QAO28_RS02495 WP_001788928.1 450647..451333(+) (comEA) [Staphylococcus aureus strain IT-MSSA53]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969