Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QAY65_RS02410 Genome accession   NZ_CP123102
Coordinates   449455..449952 (+) Length   165 a.a.
NCBI ID   WP_029650985.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA54     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444455..454952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY65_RS02370 (QAY65_02385) - 444499..445485 (+) 987 WP_000161311.1 ROK family glucokinase -
  QAY65_RS02375 (QAY65_02390) - 445485..445814 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAY65_RS02380 (QAY65_02395) - 445811..446434 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAY65_RS02385 (QAY65_02400) comGA 446486..447460 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY65_RS02390 (QAY65_02405) comGB 447432..448502 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY65_RS02395 (QAY65_02410) comGC 448516..448827 (+) 312 WP_031763468.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY65_RS02400 (QAY65_02415) comGD 448805..449251 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY65_RS02405 (QAY65_02420) comGE 449238..449537 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  QAY65_RS02410 (QAY65_02425) comGF 449455..449952 (+) 498 WP_029650985.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY65_RS02415 (QAY65_02430) - 450049..450195 (+) 147 WP_001792109.1 hypothetical protein -
  QAY65_RS02420 (QAY65_02435) - 450185..450709 (+) 525 WP_001015120.1 shikimate kinase -
  QAY65_RS02425 (QAY65_02440) gcvT 450868..451959 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY65_RS02430 (QAY65_02445) gcvPA 451979..453325 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY65_RS02435 (QAY65_02450) gcvPB 453318..454790 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.05 Da        Isoelectric Point: 10.3787

>NTDB_id=818727 QAY65_RS02410 WP_029650985.1 449455..449952(+) (comGF) [Staphylococcus aureus strain IT-MSSA54]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEKMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=818727 QAY65_RS02410 WP_029650985.1 449455..449952(+) (comGF) [Staphylococcus aureus strain IT-MSSA54]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAAAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

99.394

100

0.994
  comGF Staphylococcus aureus MW2

95.758

100

0.958