Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   R4709_RS05515 Genome accession   NZ_CP137102
Coordinates   1069385..1070482 (-) Length   365 a.a.
NCBI ID   WP_000266667.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1064385..1075482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS05500 - 1064851..1066473 (-) 1623 WP_000958760.1 ATP-binding cassette domain-containing protein -
  R4709_RS05505 trpS 1066679..1067704 (+) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  R4709_RS05510 guaB 1067856..1069334 (+) 1479 WP_000073428.1 IMP dehydrogenase -
  R4709_RS05515 recF 1069385..1070482 (-) 1098 WP_000266667.1 DNA replication/repair protein RecF Machinery gene
  R4709_RS05520 yaaA 1070485..1070853 (-) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  R4709_RS05525 yfmF 1071012..1072262 (+) 1251 WP_000424271.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  R4709_RS05530 yfmH 1072259..1073542 (+) 1284 WP_277779617.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  R4709_RS05535 rodZ 1073584..1074405 (+) 822 WP_001227958.1 cytoskeleton protein RodZ -
  R4709_RS05540 pgsA 1074416..1074961 (+) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41944.01 Da        Isoelectric Point: 8.6746

>NTDB_id=818679 R4709_RS05515 WP_000266667.1 1069385..1070482(-) (recF) [Streptococcus pneumoniae strain 16H3071-2]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=818679 R4709_RS05515 WP_000266667.1 1069385..1070482(-) (recF) [Streptococcus pneumoniae strain 16H3071-2]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAAGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.452

100

0.995
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46