Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4709_RS04995 Genome accession   NZ_CP137102
Coordinates   980416..981186 (-) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975416..986186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS04965 comA 975550..977703 (-) 2154 WP_000668304.1 peptide cleavage/export ABC transporter ComA Regulator
  R4709_RS04970 - 978290..978415 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4709_RS04975 blpU 978418..978648 (-) 231 Protein_990 bacteriocin-like peptide BlpU -
  R4709_RS04980 - 978851..979151 (-) 301 Protein_991 transposase family protein -
  R4709_RS04985 - 979188..979421 (-) 234 WP_000659556.1 acyl carrier protein -
  R4709_RS04990 plsX 979427..980419 (-) 993 WP_050311686.1 phosphate acyltransferase PlsX -
  R4709_RS04995 recO 980416..981186 (-) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  R4709_RS05000 - 981183..982352 (-) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  R4709_RS05005 - 982501..983511 (+) 1011 WP_277779651.1 YeiH family protein -
  R4709_RS05010 - 983540..983833 (-) 294 WP_277779650.1 hypothetical protein -
  R4709_RS05015 - 983874..984311 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=818669 R4709_RS04995 WP_000616162.1 980416..981186(-) (recO) [Streptococcus pneumoniae strain 16H3071-2]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=818669 R4709_RS04995 WP_000616162.1 980416..981186(-) (recO) [Streptococcus pneumoniae strain 16H3071-2]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996