Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4710_RS03610 Genome accession   NZ_CP137101
Coordinates   695722..696432 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 690722..701432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS03595 - 691263..691511 (-) 249 WP_000364990.1 YneF family protein -
  R4710_RS03600 treC 691767..693392 (-) 1626 WP_317805173.1 alpha,alpha-phosphotrehalase -
  R4710_RS03605 treP 693570..695537 (-) 1968 WP_050245235.1 PTS system trehalose-specific EIIBC component -
  R4710_RS03610 treR 695722..696432 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4710_RS03615 - 696587..697863 (+) 1277 WP_404969405.1 ISL3 family transposase -
  R4710_RS03620 - 697938..698864 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  R4710_RS03625 amiE 698875..699942 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R4710_RS03630 amiD 699951..700877 (-) 927 WP_044812043.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=818537 R4710_RS03610 WP_000760673.1 695722..696432(+) (treR) [Streptococcus pneumoniae strain 16P2012-2]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=818537 R4710_RS03610 WP_000760673.1 695722..696432(+) (treR) [Streptococcus pneumoniae strain 16P2012-2]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593