Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4703_RS06345 Genome accession   NZ_CP137100
Coordinates   1152892..1153662 (+) Length   256 a.a.
NCBI ID   WP_050201061.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1147892..1158662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS06330 - 1149536..1149973 (+) 438 WP_023396087.1 CoA-binding protein -
  R4703_RS06335 - 1150145..1151155 (-) 1011 WP_023396088.1 YeiH family protein -
  R4703_RS06340 - 1151726..1152895 (+) 1170 WP_023396089.1 pyridoxal phosphate-dependent aminotransferase -
  R4703_RS06345 recO 1152892..1153662 (+) 771 WP_050201061.1 DNA repair protein RecO Machinery gene
  R4703_RS06350 plsX 1153659..1154651 (+) 993 WP_023396091.1 phosphate acyltransferase PlsX -
  R4703_RS06355 - 1154657..1154890 (+) 234 WP_000136446.1 acyl carrier protein -
  R4703_RS06360 - 1154927..1155226 (+) 300 Protein_1205 transposase family protein -
  R4703_RS06365 cipB 1155429..1155587 (+) 159 WP_001093073.1 bacteriocin class II family protein Regulator
  R4703_RS06370 - 1155590..1155715 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4703_RS06375 comA 1156306..1158459 (+) 2154 WP_000668282.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29832.34 Da        Isoelectric Point: 5.1721

>NTDB_id=818462 R4703_RS06345 WP_050201061.1 1152892..1153662(+) (recO) [Streptococcus pneumoniae strain LYP]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNILYLLNQFQAIDFETLEAISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=818462 R4703_RS06345 WP_050201061.1 1152892..1153662(+) (recO) [Streptococcus pneumoniae strain LYP]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAACTTTCGGGAGGATGACAAGCTCGTCAAGATTTT
TACAGAGCAGGCTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCTCCAGTTATTCAGCCCTTGG
TGCTGGCTCGATTTCTCTTACGAATCAATGATGACGGGCTCAGTTACATTGAGGACTATCATGAGGTGATGACTTTTCCC
AAGATTAATAGCGATCTCTTTGTCATGGCCTATGCGACCTATGTGGCGGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGTTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATTAGTCTCAATTTTAATGAGTGTGTCTTCTGTCATCGGATCGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGCGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAACCCCAATATCCTCTATCTGCTCAATCAGTTTCAAGCCATTGATTTTGAGACTTTGGAGGCCATTTCGCTCAAGCCCG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTATTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.656

100

0.977