Detailed information NTG0818436

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R4703_RS04570
• Genome accession: NZ_CP137100
• Coordinates: 835630..836034 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588023.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain LYP
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 830630..841034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4703_RS04530	rnpA	831044..831415 (-)	372	WP_000739244.1	ribonuclease P protein component	-
R4703_RS04535	-	831432..831563 (-)	132	WP_000768904.1	hypothetical protein	-
R4703_RS04540	-	831564..832754 (-)	1191	WP_000167770.1	acetate kinase	-
R4703_RS04545	comGH	832805..833758 (-)	954	WP_000345122.1	class I SAM-dependent methyltransferase	Machinery gene
R4703_RS04550	-	833819..834413 (-)	595	Protein_870	class I SAM-dependent methyltransferase	-
R4703_RS04555	comGG/cglG	834550..834963 (-)	414	WP_000265620.1	competence type IV pilus minor pilin ComGG	Machinery gene
R4703_RS04560	comGF/cglF	834941..835402 (-)	462	WP_000250540.1	competence type IV pilus minor pilin ComGF	Machinery gene
R4703_RS04565	comGE/cglE	835365..835667 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R4703_RS04570	comGD/cglD	835630..836034 (-)	405	WP_000588023.1	competence type IV pilus minor pilin ComGD	Machinery gene
R4703_RS04575	comGC/cglC	836027..836293 (-)	267	WP_050129046.1	competence type IV pilus major pilin ComGC	Machinery gene
R4703_RS04580	-	836295..836552 (-)	258	WP_000698513.1	hypothetical protein	-
R4703_RS04585	-	836784..837740 (-)	957	WP_219576515.1	N-acetylmuramoyl-L-alanine amidase family protein	-
R4703_RS04590	-	837743..838078 (-)	336	WP_050200954.1	phage holin	-
R4703_RS04595	-	838082..838381 (-)	300	WP_001811580.1	hypothetical protein	-
R4703_RS04600	-	838390..838740 (-)	351	WP_000852245.1	hypothetical protein	-
R4703_RS04605	-	838743..838946 (-)	204	WP_001091112.1	hypothetical protein	-
R4703_RS04610	-	838927..839044 (-)	118	Protein_882	dihydrodipicolinate reductase	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14638.82 Da
• Isoelectric Point: 10.2164

>NTDB_id=818436 R4703_RS04570 WP_000588023.1 835630..836034(-) (comGD/cglD) [Streptococcus pneumoniae strain LYP]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=818436 R4703_RS04570 WP_000588023.1 835630..836034(-) (comGD/cglD) [Streptococcus pneumoniae strain LYP]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	98.507	100	0.985
comGD/cglD	Streptococcus pneumoniae Rx1	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae D39	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae R6	97.761	100	0.978
comGD/cglD	Streptococcus mitis SK321	97.015	100	0.97
comGD/cglD	Streptococcus mitis NCTC 12261	97.744	99.254	0.97
comGD	Streptococcus gordonii str. Challis substr. CH1	58.268	94.776	0.552
comGD	Streptococcus mutans UA140	49.219	95.522	0.47
comGD	Streptococcus mutans UA159	49.219	95.522	0.47