Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO43_RS10510 | Genome accession | NZ_CP123082 |
| Coordinates | 2118454..2118879 (+) | Length | 141 a.a. |
| NCBI ID | WP_015978401.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SW-MRSA58 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2111531..2156687 | 2118454..2118879 | within | 0 |
Gene organization within MGE regions
Location: 2111531..2156687
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO43_RS10430 (QAO43_10460) | - | 2111531..2113134 (+) | 1604 | Protein_2017 | IS1182-like element IS1182 family transposase | - |
| QAO43_RS10435 (QAO43_10465) | - | 2113235..2113531 (-) | 297 | Protein_2018 | toxin | - |
| QAO43_RS10440 (QAO43_10470) | - | 2113553..2113933 (-) | 381 | WP_411888872.1 | helix-turn-helix domain-containing protein | - |
| QAO43_RS10445 (QAO43_10475) | - | 2114095..2114319 (+) | 225 | WP_000333485.1 | DUF739 family protein | - |
| QAO43_RS10450 (QAO43_10480) | - | 2114336..2114779 (+) | 444 | WP_000435360.1 | hypothetical protein | - |
| QAO43_RS10455 (QAO43_10485) | - | 2114794..2114937 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| QAO43_RS10460 (QAO43_10490) | - | 2114927..2115136 (-) | 210 | WP_000642492.1 | hypothetical protein | - |
| QAO43_RS10465 (QAO43_10495) | - | 2115576..2115761 (+) | 186 | WP_000933363.1 | helix-turn-helix domain-containing protein | - |
| QAO43_RS10470 (QAO43_10500) | - | 2115763..2116515 (+) | 753 | WP_023487064.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO43_RS10475 (QAO43_10505) | - | 2116531..2116707 (+) | 177 | WP_001094935.1 | hypothetical protein | - |
| QAO43_RS10480 (QAO43_10510) | - | 2116682..2116912 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| QAO43_RS10485 (QAO43_10515) | - | 2116962..2117099 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| QAO43_RS10490 (QAO43_10520) | - | 2117092..2117253 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| QAO43_RS10495 (QAO43_10525) | - | 2117347..2117607 (+) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| QAO43_RS10500 (QAO43_10530) | - | 2117617..2117838 (+) | 222 | WP_000815400.1 | DUF2483 family protein | - |
| QAO43_RS10505 (QAO43_10535) | - | 2117831..2118454 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| QAO43_RS10510 (QAO43_10540) | ssbA | 2118454..2118879 (+) | 426 | WP_015978401.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO43_RS10515 (QAO43_10545) | - | 2118890..2119441 (+) | 552 | WP_031927924.1 | NUMOD4 domain-containing protein | - |
| QAO43_RS10520 (QAO43_10550) | - | 2119442..2120116 (+) | 675 | WP_411888871.1 | putative HNHc nuclease | - |
| QAO43_RS10525 (QAO43_10555) | - | 2120226..2120885 (-) | 660 | WP_016028252.1 | hypothetical protein | - |
| QAO43_RS10530 (QAO43_10560) | - | 2120931..2121701 (+) | 771 | WP_000190223.1 | conserved phage C-terminal domain-containing protein | - |
| QAO43_RS10535 (QAO43_10565) | - | 2121711..2122490 (+) | 780 | WP_000803062.1 | ATP-binding protein | - |
| QAO43_RS10540 (QAO43_10570) | - | 2122484..2122642 (+) | 159 | WP_000256596.1 | hypothetical protein | - |
| QAO43_RS10545 (QAO43_10575) | - | 2122655..2122876 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| QAO43_RS10550 (QAO43_10580) | - | 2122886..2123293 (+) | 408 | WP_000401950.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO43_RS10555 (QAO43_10585) | - | 2123293..2123478 (+) | 186 | WP_001187264.1 | DUF3113 family protein | - |
| QAO43_RS10560 (QAO43_10590) | - | 2123479..2123838 (+) | 360 | WP_031895324.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO43_RS10565 (QAO43_10595) | - | 2123839..2124087 (+) | 249 | WP_411888870.1 | phi PVL orf 51-like protein | - |
| QAO43_RS10570 (QAO43_10600) | - | 2124100..2124501 (+) | 402 | WP_411888869.1 | hypothetical protein | - |
| QAO43_RS10575 (QAO43_10605) | - | 2124498..2124782 (+) | 285 | WP_001105618.1 | hypothetical protein | - |
| QAO43_RS10580 (QAO43_10610) | - | 2124775..2125026 (+) | 252 | WP_031766094.1 | DUF1024 family protein | - |
| QAO43_RS10585 (QAO43_10615) | - | 2125016..2125198 (+) | 183 | WP_000028421.1 | hypothetical protein | - |
| QAO43_RS10590 (QAO43_10620) | - | 2125191..2125721 (+) | 531 | WP_000185651.1 | dUTP diphosphatase | - |
| QAO43_RS10595 (QAO43_10625) | - | 2125758..2125964 (+) | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| QAO43_RS10600 (QAO43_10630) | - | 2125961..2126155 (+) | 195 | WP_000132920.1 | hypothetical protein | - |
| QAO43_RS10605 (QAO43_10635) | - | 2126152..2126355 (+) | 204 | WP_001072794.1 | hypothetical protein | - |
| QAO43_RS10610 (QAO43_10640) | rinB | 2126348..2126521 (+) | 174 | WP_031895293.1 | transcriptional activator RinB | - |
| QAO43_RS10615 (QAO43_10645) | - | 2126522..2126668 (+) | 147 | WP_000989997.1 | hypothetical protein | - |
| QAO43_RS10620 (QAO43_10650) | - | 2126683..2127102 (+) | 420 | WP_000058633.1 | transcriptional regulator | - |
| QAO43_RS10625 (QAO43_10655) | - | 2127289..2127783 (+) | 495 | WP_001004406.1 | terminase small subunit | - |
| QAO43_RS10630 (QAO43_10660) | - | 2127786..2129081 (+) | 1296 | WP_031895294.1 | PBSX family phage terminase large subunit | - |
| QAO43_RS10635 (QAO43_10665) | - | 2129092..2130627 (+) | 1536 | WP_000921892.1 | phage portal protein | - |
| QAO43_RS10640 (QAO43_10670) | - | 2130634..2131629 (+) | 996 | WP_001133043.1 | minor capsid protein | - |
| QAO43_RS10645 (QAO43_10675) | - | 2131702..2131872 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| QAO43_RS10650 (QAO43_10680) | - | 2132007..2132621 (+) | 615 | WP_009560326.1 | DUF4355 domain-containing protein | - |
| QAO43_RS10655 (QAO43_10685) | - | 2132635..2133609 (+) | 975 | WP_000438495.1 | phage major capsid protein | - |
| QAO43_RS10660 (QAO43_10690) | - | 2133631..2133918 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| QAO43_RS10665 (QAO43_10695) | - | 2133927..2134259 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| QAO43_RS10670 (QAO43_10700) | - | 2134256..2134558 (+) | 303 | WP_001268304.1 | hypothetical protein | - |
| QAO43_RS10675 (QAO43_10705) | - | 2134558..2134905 (+) | 348 | WP_001017811.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QAO43_RS10680 (QAO43_10710) | - | 2134917..2135300 (+) | 384 | WP_000188653.1 | hypothetical protein | - |
| QAO43_RS10685 (QAO43_10715) | - | 2135319..2135900 (+) | 582 | WP_000002583.1 | phage major tail protein, TP901-1 family | - |
| QAO43_RS10690 (QAO43_10720) | - | 2135962..2136327 (+) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| QAO43_RS10695 (QAO43_10725) | - | 2136357..2136701 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| QAO43_RS10700 (QAO43_10730) | - | 2136718..2140182 (+) | 3465 | WP_411888868.1 | hypothetical protein | - |
| QAO43_RS10705 (QAO43_10735) | - | 2140195..2141142 (+) | 948 | WP_000350680.1 | phage tail family protein | - |
| QAO43_RS10710 (QAO43_10740) | - | 2141151..2143052 (+) | 1902 | WP_009560293.1 | SGNH/GDSL hydrolase family protein | - |
| QAO43_RS10715 (QAO43_10745) | - | 2143067..2144977 (+) | 1911 | WP_411888867.1 | hypothetical protein | - |
| QAO43_RS10720 (QAO43_10750) | - | 2144977..2146800 (+) | 1824 | WP_411907243.1 | phage baseplate upper protein | - |
| QAO43_RS10725 (QAO43_10755) | - | 2146800..2147177 (+) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| QAO43_RS10730 (QAO43_10760) | - | 2147181..2147354 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| QAO43_RS10735 (QAO43_10765) | - | 2147395..2147694 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| QAO43_RS10740 (QAO43_10770) | - | 2147831..2149735 (+) | 1905 | WP_031895302.1 | glucosaminidase domain-containing protein | - |
| QAO43_RS10745 (QAO43_10775) | - | 2149748..2150986 (+) | 1239 | WP_000276650.1 | BppU family phage baseplate upper protein | - |
| QAO43_RS10750 (QAO43_10780) | - | 2150991..2151386 (+) | 396 | WP_000387943.1 | hypothetical protein | - |
| QAO43_RS10755 (QAO43_10785) | - | 2151441..2151878 (+) | 438 | WP_031807125.1 | phage holin | - |
| QAO43_RS10760 (QAO43_10790) | - | 2151859..2153304 (+) | 1446 | WP_001148121.1 | SH3 domain-containing protein | - |
| QAO43_RS10765 (QAO43_10795) | - | 2153932..2154474 (-) | 543 | WP_411888865.1 | TetR/AcrR family transcriptional regulator | - |
| QAO43_RS10770 (QAO43_10800) | - | 2154680..2155273 (+) | 594 | WP_000690628.1 | recombinase family protein | - |
| QAO43_RS10775 (QAO43_10805) | - | 2155245..2156687 (+) | 1443 | WP_031870354.1 | Mu transposase C-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15947.45 Da Isoelectric Point: 5.8790
>NTDB_id=818359 QAO43_RS10510 WP_015978401.1 2118454..2118879(+) (ssbA) [Staphylococcus aureus strain SW-MRSA58]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=818359 QAO43_RS10510 WP_015978401.1 2118454..2118879(+) (ssbA) [Staphylococcus aureus strain SW-MRSA58]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
74.576 |
83.688 |
0.624 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |