Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QAO35_RS07850 Genome accession   NZ_CP123074
Coordinates   1556188..1556685 (+) Length   165 a.a.
NCBI ID   WP_001788897.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MRSA61     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551188..1561685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO35_RS07810 (QAO35_07825) - 1551232..1552218 (+) 987 WP_000161309.1 ROK family glucokinase -
  QAO35_RS07815 (QAO35_07830) - 1552218..1552547 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAO35_RS07820 (QAO35_07835) - 1552544..1553167 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAO35_RS07825 (QAO35_07840) comGA 1553219..1554193 (+) 975 WP_041174216.1 competence type IV pilus ATPase ComGA Machinery gene
  QAO35_RS07830 (QAO35_07845) comGB 1554165..1555235 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAO35_RS07835 (QAO35_07850) comGC 1555249..1555560 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAO35_RS07840 (QAO35_07855) comGD 1555538..1555984 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAO35_RS07845 (QAO35_07860) comGE 1555971..1556270 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  QAO35_RS07850 (QAO35_07865) comGF 1556188..1556685 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAO35_RS07855 (QAO35_07870) - 1556782..1556928 (+) 147 WP_001792109.1 hypothetical protein -
  QAO35_RS07860 (QAO35_07875) - 1556918..1557442 (+) 525 WP_001015120.1 shikimate kinase -
  QAO35_RS07865 (QAO35_07880) gcvT 1557601..1558692 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QAO35_RS07870 (QAO35_07885) gcvPA 1558712..1560058 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAO35_RS07875 (QAO35_07890) gcvPB 1560051..1561523 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.99 Da        Isoelectric Point: 10.1964

>NTDB_id=818220 QAO35_RS07850 WP_001788897.1 1556188..1556685(+) (comGF) [Staphylococcus aureus strain SW-MRSA61]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=818220 QAO35_RS07850 WP_001788897.1 1556188..1556685(+) (comGF) [Staphylococcus aureus strain SW-MRSA61]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

100

100

1
  comGF Staphylococcus aureus MW2

96.364

100

0.964