Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAY76_RS12880 Genome accession   NZ_CP123072
Coordinates   2594432..2594827 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA62     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2589432..2599827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY76_RS12850 (QAY76_12845) - 2590690..2591094 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QAY76_RS12855 (QAY76_12850) - 2591432..2591524 (+) 93 WP_001790611.1 hypothetical protein -
  QAY76_RS12860 (QAY76_12855) - 2591656..2591889 (+) 234 WP_000384523.1 DUF1146 family protein -
  QAY76_RS12865 (QAY76_12860) murA 2592000..2593265 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAY76_RS12870 (QAY76_12865) fabZ 2593299..2593739 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAY76_RS12875 (QAY76_12870) - 2593798..2594238 (-) 441 WP_000846746.1 YwpF-like family protein -
  QAY76_RS12880 (QAY76_12875) ssb 2594432..2594827 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QAY76_RS12885 (QAY76_12880) sceD 2595215..2595910 (+) 696 WP_047928572.1 lytic transglycosylase SceD -
  QAY76_RS12890 (QAY76_12885) tenA 2596434..2597123 (+) 690 WP_000396077.1 thiaminase II -
  QAY76_RS12895 (QAY76_12890) thiD 2597116..2597946 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAY76_RS12900 (QAY76_12895) thiM 2597930..2598730 (+) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  QAY76_RS12905 (QAY76_12900) thiE 2598723..2599364 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=818191 QAY76_RS12880 WP_000932694.1 2594432..2594827(+) (ssb) [Staphylococcus aureus strain SW-MSSA62]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=818191 QAY76_RS12880 WP_000932694.1 2594432..2594827(+) (ssb) [Staphylococcus aureus strain SW-MSSA62]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992