Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QAY76_RS02145 Genome accession   NZ_CP123072
Coordinates   398649..399335 (+) Length   228 a.a.
NCBI ID   WP_078104170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA62     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393649..404335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY76_RS02110 (QAY76_02100) yqeH 394176..395276 (+) 1101 WP_411893010.1 ribosome biogenesis GTPase YqeH -
  QAY76_RS02115 (QAY76_02105) aroE 395290..396096 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  QAY76_RS02120 (QAY76_02110) yhbY 396100..396390 (+) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  QAY76_RS02125 (QAY76_02115) nadD 396393..396962 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QAY76_RS02130 (QAY76_02120) yqeK 396952..397536 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QAY76_RS02135 (QAY76_02125) rsfS 397537..397890 (+) 354 WP_001088020.1 ribosome silencing factor -
  QAY76_RS02140 (QAY76_02130) - 397893..398609 (+) 717 WP_000084822.1 class I SAM-dependent DNA methyltransferase -
  QAY76_RS02145 (QAY76_02135) comEA 398649..399335 (+) 687 WP_078104170.1 ComEA family DNA-binding protein Machinery gene
  QAY76_RS02150 (QAY76_02140) - 399427..399888 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QAY76_RS02155 (QAY76_02145) comEC 399893..402094 (+) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QAY76_RS02160 (QAY76_02150) holA 402151..403125 (+) 975 WP_001282563.1 DNA polymerase III subunit delta -
  QAY76_RS02165 (QAY76_02155) rpsT 403170..403421 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25875.55 Da        Isoelectric Point: 9.3305

>NTDB_id=818161 QAY76_RS02145 WP_078104170.1 398649..399335(+) (comEA) [Staphylococcus aureus strain SW-MSSA62]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=818161 QAY76_RS02145 WP_078104170.1 398649..399335(+) (comEA) [Staphylococcus aureus strain SW-MSSA62]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969