Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   R3L04_RS01125 Genome accession   NZ_CP137075
Coordinates   240665..241180 (+) Length   171 a.a.
NCBI ID   WP_000477149.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235665..246180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS01105 (R3L04_01110) - 235985..237445 (+) 1461 WP_000004971.1 amino acid permease -
  R3L04_RS01110 (R3L04_01115) - 237722..238927 (+) 1206 WP_000512701.1 RtcB family protein -
  R3L04_RS01115 (R3L04_01120) - 238931..239089 (+) 159 WP_000692859.1 hypothetical protein -
  R3L04_RS01120 (R3L04_01125) omp38 239213..240283 (-) 1071 WP_000777877.1 outer membrane protein Omp38 -
  R3L04_RS01125 (R3L04_01130) fimT 240665..241180 (+) 516 WP_000477149.1 GspH/FimT family pseudopilin Machinery gene
  R3L04_RS01130 (R3L04_01135) - 241289..242464 (+) 1176 WP_005119697.1 thiolase family protein -
  R3L04_RS01135 (R3L04_01140) - 242591..243034 (+) 444 WP_001176580.1 VOC family protein -
  R3L04_RS01140 (R3L04_01145) - 243077..243430 (-) 354 WP_000457785.1 multidrug efflux SMR transporter -
  R3L04_RS01145 (R3L04_01150) - 243512..243997 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  R3L04_RS01150 (R3L04_01155) - 243990..245633 (-) 1644 WP_000281763.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19633.88 Da        Isoelectric Point: 8.8196

>NTDB_id=818112 R3L04_RS01125 WP_000477149.1 240665..241180(+) (fimT) [Acinetobacter baumannii strain SNUBHAB0006]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=818112 R3L04_RS01125 WP_000477149.1 240665..241180(+) (fimT) [Acinetobacter baumannii strain SNUBHAB0006]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACTTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427