Detailed information NTG0817924

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QDE57_RS21540
• Genome accession: NZ_CP123040
• Coordinates: 4419222..4420022 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain KP160802
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4414222..4425022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDE57_RS21505 (QDE57_21505)	gspH	4414378..4414893 (+)	516	WP_020804560.1	type II secretion system minor pseudopilin GspH	-
QDE57_RS21510 (QDE57_21510)	gspI	4414890..4415255 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QDE57_RS21515 (QDE57_21515)	gspJ	4415252..4415848 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
QDE57_RS21520 (QDE57_21520)	gspK	4415845..4416831 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
QDE57_RS21525 (QDE57_21525)	gspL	4416818..4418011 (+)	1194	WP_020804558.1	type II secretion system protein GspL	-
QDE57_RS21530 (QDE57_21530)	-	4418004..4418489 (+)	486	WP_004145896.1	type II secretion system protein M	-
QDE57_RS21535 (QDE57_21535)	-	4418479..4419225 (+)	747	WP_004145897.1	type II secretion system protein N	-
QDE57_RS21540 (QDE57_21540)	pilD	4419222..4420022 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
QDE57_RS21545 (QDE57_21545)	hrpB	4420070..4422499 (-)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
QDE57_RS21550 (QDE57_21550)	thpR	4422572..4423108 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
QDE57_RS21555 (QDE57_21555)	sfsA	4423108..4423824 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
QDE57_RS21560 (QDE57_21560)	dksA	4423987..4424442 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=817924 QDE57_RS21540 WP_004213441.1 4419222..4420022(+) (pilD) [Klebsiella pneumoniae strain KP160802]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=817924 QDE57_RS21540 WP_004213441.1 4419222..4420022(+) (pilD) [Klebsiella pneumoniae strain KP160802]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425