Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS62_RS01720 Genome accession   NZ_AP023230
Coordinates   321941..322570 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YJ4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 316941..327570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS62_RS01705 helD 317183..319237 (-) 2055 WP_001295354.1 DNA helicase IV -
  HXS62_RS01710 yccF 319360..319806 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HXS62_RS01715 yccS 319816..321978 (+) 2163 WP_000875058.1 YccS family putative transporter -
  HXS62_RS01720 sxy/tfoX 321941..322570 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HXS62_RS01725 sulA 322789..323298 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HXS62_RS01730 ompA 323655..324695 (+) 1041 WP_000750416.1 porin OmpA -
  HXS62_RS01735 matP 324771..325223 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HXS62_RS01740 ycbZ 325409..327169 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81754 HXS62_RS01720 WP_000839153.1 321941..322570(-) (sxy/tfoX) [Escherichia coli strain YJ4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81754 HXS62_RS01720 WP_000839153.1 321941..322570(-) (sxy/tfoX) [Escherichia coli strain YJ4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment