Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R3L13_RS04895 Genome accession   NZ_CP137055
Coordinates   1007067..1008008 (-) Length   313 a.a.
NCBI ID   WP_406626783.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1002067..1013008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS04880 (R3L13_04900) bauB 1004378..1005346 (-) 969 WP_004739503.1 siderophore-binding periplasmic lipoprotein BauB -
  R3L13_RS04885 (R3L13_04905) bauE 1005353..1006123 (-) 771 WP_000582117.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  R3L13_RS04890 (R3L13_04910) bauC 1006120..1007067 (-) 948 WP_004739506.1 ferric acinetobactin ABC transporter permease subunit BauC -
  R3L13_RS04895 (R3L13_04915) ceuB 1007067..1008008 (-) 942 WP_406626783.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  R3L13_RS04900 (R3L13_04920) basB 1008641..1010668 (+) 2028 WP_406626808.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  R3L13_RS04905 (R3L13_04925) basA 1010739..1012586 (-) 1848 WP_004739512.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33918.95 Da        Isoelectric Point: 8.1516

>NTDB_id=817522 R3L13_RS04895 WP_406626783.1 1007067..1008008(-) (ceuB) [Acinetobacter baumannii strain SNUBHAB0137]
MQFGLFCIFIILCICSLLLGAEPIQWTTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHCFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLVCDIHGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=817522 R3L13_RS04895 WP_406626783.1 1007067..1008008(-) (ceuB) [Acinetobacter baumannii strain SNUBHAB0137]
ATGCAATTCGGCTTATTCTGTATTTTTATCATTTTATGTATTTGTTCGTTATTGCTCGGGGCTGAGCCAATACAGTGGAC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATCCCTCGTTTAATCACTATTGTGCTCA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACATCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGTTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGCCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGTTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGTCATTATGAAGTCATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTCGCACATTGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCTTAGGACTCA
GTTATGCAGCTATAGCCGCCATTGGTTTGATACTGGTTGCTATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTGGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTGGGTGGGGCGTCTCTATTACTAGTTTGCGACATTCATGGTCGCTCCATTATTTATCCATTTGAAGTGCCAATTGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.595

94.569

0.422