Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QBD03_RS06170 Genome accession   NZ_CP122959
Coordinates   1274957..1277224 (-) Length   755 a.a.
NCBI ID   WP_280102549.1    Uniprot ID   A0AAF0GLL6
Organism   Latilactobacillus sakei strain HUP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269957..1282224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06145 (QBD03_06145) - 1270079..1271026 (-) 948 WP_280102547.1 hypothetical protein -
  QBD03_RS06150 (QBD03_06150) - 1271115..1272833 (-) 1719 WP_011374765.1 ribonuclease J -
  QBD03_RS06155 (QBD03_06155) rpsO 1273061..1273330 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  QBD03_RS06160 (QBD03_06160) rpsT 1273609..1273863 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  QBD03_RS06165 (QBD03_06165) holA 1273932..1274960 (-) 1029 WP_280102548.1 DNA polymerase III subunit delta -
  QBD03_RS06170 (QBD03_06170) comEC 1274957..1277224 (-) 2268 WP_280102549.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QBD03_RS06175 (QBD03_06175) - 1277221..1277709 (-) 489 WP_011374770.1 ComE operon protein 2 -
  QBD03_RS06180 (QBD03_06180) comEA 1277767..1278474 (-) 708 WP_280102550.1 helix-hairpin-helix domain-containing protein Machinery gene
  QBD03_RS06185 (QBD03_06185) - 1278546..1279592 (-) 1047 WP_280102551.1 SepM family pheromone-processing serine protease -
  QBD03_RS06190 (QBD03_06190) coaD 1279594..1280091 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  QBD03_RS06195 (QBD03_06195) rsmD 1280104..1280658 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QBD03_RS06200 (QBD03_06200) - 1280663..1280953 (-) 291 WP_016265218.1 YlbG family protein -
  QBD03_RS06205 (QBD03_06205) - 1280977..1282065 (-) 1089 WP_280102552.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 85453.17 Da        Isoelectric Point: 9.8243

>NTDB_id=817518 QBD03_RS06170 WP_280102549.1 1274957..1277224(-) (comEC) [Latilactobacillus sakei strain HUP1]
MKNNWIYPVICLISLNSLMLGGQSWLTWSLLLLAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSMTQPQQPVAQYFK
VQPDAIQVVGDSVQLTAIGQQDDQTIKAYYRCQTFAEKRQWQQVQHPVLFYGAKDFERIQGATNRNEFDYARFLAQQKRC
FYQLTLAKETTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVILGRLGIIHLLSLSGLH
VFYLVQVIRCCATYCRIPREWLNWMLFGLLPVYALLVGGTTSISRAIALILCRLLCEQLGIRQSRLDSWSLVLLVNLFWQ
PYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPVVLGLVIVASVMLP
VSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQRRKRLKRTLASLYLASFLAI
HFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRWAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDA
DHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGTVFKVGPQKFNVLAPTKPGKGENSDSLVLQA
QIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPAVIKKLHLKGALISAGRENRYGHPHQETLTTLQA
AKVPYWLTAQQGMLTWSYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=817518 QBD03_RS06170 WP_280102549.1 1274957..1277224(-) (comEC) [Latilactobacillus sakei strain HUP1]
ATGAAAAACAACTGGATTTATCCAGTTATTTGTTTAATCAGTTTAAATAGCTTAATGCTTGGGGGCCAATCTTGGTTAAC
CTGGAGCTTATTATTATTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTAT
GCCTTGTTTATGGGGGCCGTTTTTGGATAAGCTATCATAGTATGACACAACCGCAACAACCGGTAGCACAGTATTTTAAA
GTGCAACCCGATGCGATTCAAGTAGTGGGCGACAGTGTTCAATTAACGGCAATCGGCCAACAAGATGATCAGACTATTAA
GGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGAGGCAGTGGCAACAAGTACAACACCCCGTTTTGTTCTATGGCGCAA
AAGATTTTGAACGTATACAAGGAGCTACCAATCGAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGC
TTTTACCAACTGACGTTAGCCAAAGAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTG
GCGCCAAACGTGTGCGCTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGC
GGGAAGCGCAAGTTGACCATTACCAGGTTATTTTGGGCCGCTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCAC
GTGTTTTATTTAGTGCAAGTCATTCGGTGCTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGGATGTTATT
TGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATGCCGGT
TACTTTGCGAACAGTTGGGCATTCGGCAATCAAGATTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAG
CCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCAC
GTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGA
TAATGATGAATGCCTTAGTAACGCCTATCTATCTACCAGTTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCT
GTTAGCAATCTAGTGGTTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGATTAGTCGCTCAAATTCC
CCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGCCTCTTGTTAATCGATG
GCCAGGCCATTAGTAATCAGCGGCGTAAACGGCTGAAACGCACATTGGCAAGTTTGTATCTGGCTAGTTTTTTGGCGATT
CATTTTAATCCGACTGGCCGTGTAGTCATGTTTGATATTGGTCAGGGTGATAGTTTGTTGATTCAAACGCCGTTTAACCG
GCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGTGGGCGCAGGTTTCACGAG
CGGAAAAAGTAACTGTTAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCT
GATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGGTTACCACAAAA
TCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGGTTCAGATTGAACCCTATTTAGCCGGGACCGTTTTTAAAG
TGGGGCCACAAAAGTTTAACGTCTTAGCGCCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCA
CAAATTGGTGGGGCTAGCTGGCTGTTTACAGGGGATTTAGAGCAAGAAGGCGAACGAGCGATTATCGAGCGGTATCCACA
GTTAACCGTCGATTATTTAAAAGTTGGCCATCACGGTAGTAAAACGGCTAGTGACCCTGCCGTGATTAAAAAATTACACT
TAAAAGGGGCATTAATCTCAGCCGGACGTGAGAATCGTTATGGTCATCCGCACCAAGAAACTTTGACGACTTTGCAAGCG
GCCAAAGTGCCTTATTGGCTAACGGCCCAGCAGGGGATGTTGACCTGGTCGTATGGCCCCGGTCAAAGCGAAAAACTGCA
AACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-702)

Competence protein (Competence)

(209-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

96.291

100

0.963