Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QBD03_RS06180 Genome accession   NZ_CP122959
Coordinates   1277767..1278474 (-) Length   235 a.a.
NCBI ID   WP_280102550.1    Uniprot ID   A0AAF0GQR9
Organism   Latilactobacillus sakei strain HUP1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1272767..1283474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06155 (QBD03_06155) rpsO 1273061..1273330 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  QBD03_RS06160 (QBD03_06160) rpsT 1273609..1273863 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  QBD03_RS06165 (QBD03_06165) holA 1273932..1274960 (-) 1029 WP_280102548.1 DNA polymerase III subunit delta -
  QBD03_RS06170 (QBD03_06170) comEC 1274957..1277224 (-) 2268 WP_280102549.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QBD03_RS06175 (QBD03_06175) - 1277221..1277709 (-) 489 WP_011374770.1 ComE operon protein 2 -
  QBD03_RS06180 (QBD03_06180) comEA 1277767..1278474 (-) 708 WP_280102550.1 helix-hairpin-helix domain-containing protein Machinery gene
  QBD03_RS06185 (QBD03_06185) - 1278546..1279592 (-) 1047 WP_280102551.1 SepM family pheromone-processing serine protease -
  QBD03_RS06190 (QBD03_06190) coaD 1279594..1280091 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  QBD03_RS06195 (QBD03_06195) rsmD 1280104..1280658 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QBD03_RS06200 (QBD03_06200) - 1280663..1280953 (-) 291 WP_016265218.1 YlbG family protein -
  QBD03_RS06205 (QBD03_06205) - 1280977..1282065 (-) 1089 WP_280102552.1 CAP-associated domain-containing protein -
  QBD03_RS06210 (QBD03_06210) - 1282076..1283263 (-) 1188 WP_280102553.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26173.80 Da        Isoelectric Point: 9.7682

>NTDB_id=817520 QBD03_RS06180 WP_280102550.1 1277767..1278474(-) (comEA) [Latilactobacillus sakei strain HUP1]
MMWQDYWQRYRRFWWVPCLVLLGIIASGFYWHQSQQKQKVTQNEQLLATSTSKTKPATKKTHQAATKKKGGFVDIKGAVV
YPGIYPITVSETRLFEVLKNAGGPTDVADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTPEQASTG
TSANASSASDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=817520 QBD03_RS06180 WP_280102550.1 1277767..1278474(-) (comEA) [Latilactobacillus sakei strain HUP1]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCGCGAG
TGGCTTTTATTGGCATCAATCGCAACAAAAACAAAAAGTAACGCAAAATGAGCAACTGCTAGCAACCAGTACGTCTAAAA
CAAAACCCGCTACTAAGAAGACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATTAAAGGTGCTGTGGTC
TATCCAGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGACGT
GGCTGATACCAAACGGCTTAATTTAGCCCAAAAGTTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATTGCAACGACCAGTGAGCGTACGCCAGAACAAGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCGCGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

97.872

100

0.979