Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QBD03_RS05750 Genome accession   NZ_CP122959
Coordinates   1187518..1188384 (-) Length   288 a.a.
NCBI ID   WP_280102524.1    Uniprot ID   A0AAF0GPH5
Organism   Latilactobacillus sakei strain HUP1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1182518..1193384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS05735 (QBD03_05735) topA 1183753..1185837 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  QBD03_RS05740 (QBD03_05740) - 1186088..1186522 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  QBD03_RS05745 (QBD03_05745) - 1186551..1187417 (-) 867 WP_280102523.1 NAD(P)H-binding protein -
  QBD03_RS05750 (QBD03_05750) dprA 1187518..1188384 (-) 867 WP_280102524.1 DNA-processing protein DprA Machinery gene
  QBD03_RS05755 (QBD03_05755) - 1188439..1189200 (-) 762 WP_254681583.1 ribonuclease HII -
  QBD03_RS05760 (QBD03_05760) ylqF 1189202..1190053 (-) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  QBD03_RS05765 (QBD03_05765) lepB 1190185..1190715 (-) 531 WP_035145820.1 signal peptidase I -
  QBD03_RS05770 (QBD03_05770) - 1190740..1190964 (-) 225 WP_016265150.1 YozE family protein -
  QBD03_RS05775 (QBD03_05775) - 1190975..1191604 (-) 630 WP_011374699.1 YpmS family protein -
  QBD03_RS05780 (QBD03_05780) - 1191617..1192519 (-) 903 WP_025015769.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31818.73 Da        Isoelectric Point: 8.3338

>NTDB_id=817516 QBD03_RS05750 WP_280102524.1 1187518..1188384(-) (dprA) [Latilactobacillus sakei strain HUP1]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQIARLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQGVAEKGLLLSEYALDTPARRYQFPARDKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=817516 QBD03_RS05750 WP_280102524.1 1187518..1188384(-) (dprA) [Latilactobacillus sakei strain HUP1]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTGGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGG
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCCCTCGATACACCAGCCCGGCGCTATCAATTTCCAGCCCGGGATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.264

100

0.983
  dprA Legionella pneumophila strain ERS1305867

36.806

100

0.368