Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP03_RS02400 Genome accession   NZ_CP122955
Coordinates   501203..501607 (+) Length   134 a.a.
NCBI ID   WP_286490975.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 496203..506607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS02365 (QAP03_02360) - 496374..497312 (-) 939 WP_286490980.1 tetraacyldisaccharide 4'-kinase -
  QAP03_RS02370 (QAP03_02365) - 497309..498091 (-) 783 WP_286490979.1 NAD+ synthase -
  QAP03_RS02380 (QAP03_02375) ilvC 498340..499332 (+) 993 WP_286490978.1 ketol-acid reductoisomerase -
  QAP03_RS02385 (QAP03_02380) minD 499356..500162 (+) 807 WP_286490977.1 septum site-determining protein MinD -
  QAP03_RS02390 (QAP03_02385) minE 500159..500392 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  QAP03_RS02395 (QAP03_02390) dprA 500406..501206 (+) 801 WP_286490976.1 DNA-processing protein DprA Machinery gene
  QAP03_RS02400 (QAP03_02395) dprB 501203..501607 (+) 405 WP_286490975.1 Holliday junction resolvase RuvX Machinery gene
  QAP03_RS02405 (QAP03_02400) - 501891..502250 (+) 360 WP_286490974.1 tetratricopeptide repeat protein -
  QAP03_RS02410 (QAP03_02405) - 502436..502774 (+) 339 WP_286490973.1 hypothetical protein -
  QAP03_RS02415 (QAP03_02410) - 502758..503318 (+) 561 WP_286490972.1 hypothetical protein -
  QAP03_RS02420 (QAP03_02415) - 503406..504287 (-) 882 WP_286490971.1 RluA family pseudouridine synthase -
  QAP03_RS02425 (QAP03_02420) recJ 504287..505837 (-) 1551 WP_286490970.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15231.73 Da        Isoelectric Point: 9.5501

>NTDB_id=817469 QAP03_RS02400 WP_286490975.1 501203..501607(+) (dprB) [Helicobacter pylori strain BS27-2]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNKSYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILEHYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817469 QAP03_RS02400 WP_286490975.1 501203..501607(+) (dprB) [Helicobacter pylori strain BS27-2]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATAAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCACTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948