Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAP03_RS00270 | Genome accession | NZ_CP122955 |
| Coordinates | 61531..62106 (+) | Length | 191 a.a. |
| NCBI ID | WP_286491246.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS27-2 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56531..67106
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP03_RS00245 (QAP03_00245) | uvrD | 57222..59267 (+) | 2046 | WP_286491252.1 | DNA helicase UvrD | - |
| QAP03_RS00250 (QAP03_00250) | flgA | 59264..59920 (+) | 657 | WP_286491250.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAP03_RS00255 (QAP03_00255) | - | 59930..60493 (+) | 564 | WP_000780105.1 | UbiX family flavin prenyltransferase | - |
| QAP03_RS00260 (QAP03_00260) | coaD | 60493..60966 (+) | 474 | WP_286491249.1 | pantetheine-phosphate adenylyltransferase | - |
| QAP03_RS00265 (QAP03_00265) | tmk | 60968..61543 (+) | 576 | WP_286491248.1 | dTMP kinase | - |
| QAP03_RS00270 (QAP03_00270) | comFC | 61531..62106 (+) | 576 | WP_286491246.1 | ComF family protein | Machinery gene |
| QAP03_RS00275 (QAP03_00275) | - | 62139..64178 (+) | 2040 | WP_286491244.1 | N-6 DNA methylase | - |
| QAP03_RS07920 | - | 64175..65406 (+) | 1232 | Protein_54 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21390.00 Da Isoelectric Point: 9.4519
>NTDB_id=817457 QAP03_RS00270 WP_286491246.1 61531..62106(+) (comFC) [Helicobacter pylori strain BS27-2]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=817457 QAP03_RS00270 WP_286491246.1 61531..62106(+) (comFC) [Helicobacter pylori strain BS27-2]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |