Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QAP06_RS00270 Genome accession   NZ_CP122954
Coordinates   60773..61348 (+) Length   191 a.a.
NCBI ID   WP_286465759.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 55773..66348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS00245 (QAP06_00245) uvrD 56464..58509 (+) 2046 WP_286465756.1 DNA helicase UvrD -
  QAP06_RS00250 (QAP06_00250) flgA 58506..59162 (+) 657 WP_286465757.1 flagellar basal body P-ring formation chaperone FlgA -
  QAP06_RS00255 (QAP06_00255) - 59172..59735 (+) 564 WP_000780095.1 UbiX family flavin prenyltransferase -
  QAP06_RS00260 (QAP06_00260) coaD 59735..60208 (+) 474 WP_001169242.1 pantetheine-phosphate adenylyltransferase -
  QAP06_RS00265 (QAP06_00265) tmk 60210..60785 (+) 576 WP_286465758.1 dTMP kinase -
  QAP06_RS00270 (QAP06_00270) comFC 60773..61348 (+) 576 WP_286465759.1 ComF family protein Machinery gene
  QAP06_RS00275 (QAP06_00275) - 61387..62829 (-) 1443 WP_286465760.1 hypothetical protein -
  QAP06_RS00280 (QAP06_00280) - 62892..64031 (-) 1140 WP_053575792.1 DNA methyltransferase -
  QAP06_RS00285 (QAP06_00285) - 64035..65042 (-) 1008 WP_053575793.1 DNA adenine methylase -
  QAP06_RS00290 (QAP06_00290) - 65039..65278 (-) 240 WP_000777862.1 helix-turn-helix domain-containing protein -
  QAP06_RS00295 (QAP06_00295) - 65424..65507 (+) 84 Protein_57 type II restriction endonuclease -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21377.89 Da        Isoelectric Point: 8.6742

>NTDB_id=817435 QAP06_RS00270 WP_286465759.1 60773..61348(+) (comFC) [Helicobacter pylori strain BS06]
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGHLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSTDE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=817435 QAP06_RS00270 WP_286465759.1 60773..61348(+) (comFC) [Helicobacter pylori strain BS06]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAGAATCTTACAAGAACAAGGC
CTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCACTTAAGGGCGACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
TAGCACGGACGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.194

100

0.932
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.508

98.953

0.361